Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03279 ATGGCCAATGGTCGTATATATCACAAGGCCTGCTTTCGATGCCACCATTGCCAGAATACCCTCAAGCTAAGTAACTACTGTTCTATCGATGGGGTGCTCTATTGCAGACCACACTATGATCAACTCTACAAGAGAACTGGAAGCCTGCACAAAAGCTTCGAAGGAGACCCCAAAATCCAGAAACCAGAAAAAATTGAGAATGAGAATGCCAAAACAGTGGCAAAAGCGTTTGGGGGGACAAAAGATATATGCATGTGTTGCAAAAAGACAGTGTATGCCACTGAGAAGGTTACGGTTAACGGGACTCCCTATCACAAGGCCTGCTTCAGATGTACCTATGGAGGTTGTACTATAAGCTCATCAAATTTCGTTACACATGACACAAAGCTCTACTGCAAACATCATCACATTCAACTTTTCAAAGAGAAAGGGAACTACAGTCAGCTTGAGACTACTGAAGTTTCTGCTTAA 471 0.4289 MANGRIYHKACFRCHHCQNTLKLSNYCSIDGVLYCRPHYDQLYKRTGSLHKSFEGDPKIQKPEKIENENAKTVAKAFGGTKDICMCCKKTVYATEKVTVNGTPYHKACFRCTYGGCTISSSNFVTHDTKLYCKHHHIQLFKEKGNYSQLETTEVSA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03279 156 Gene3D Cysteine Rich Protein 1 49 - -
Vifa3g03279 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 149 - -
Vifa3g03279 156 ProSiteProfiles LIM domain profile. 1 45 IPR001781 -
Vifa3g03279 156 ProSiteProfiles LIM domain profile. 82 142 IPR001781 -
Vifa3g03279 156 Pfam LIM domain 2 41 IPR001781 -
Vifa3g03279 156 Pfam LIM domain 84 139 IPR001781 -
Vifa3g03279 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 53 - -
Vifa3g03279 156 FunFam LIM domain and actin-binding 1 78 148 - -
Vifa3g03279 156 Gene3D Cysteine Rich Protein 79 148 - -
Vifa3g03279 156 PANTHER OS06G0237300 PROTEIN 74 153 - -
Vifa3g03279 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 77 109 - -
Vifa3g03279 156 SMART lim_4 2 38 IPR001781 -
Vifa3g03279 156 SMART lim_4 83 135 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03279 Vifa-Chr3 940300538 940301424 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vifa3g03279 LIM 9.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03279 K09377 - gmx:100306027 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03279 3 940300538 940301424 Vifa3g03279 3 940300538 940301424 ECH