Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03272 ATGAGAAACGAAAGGGTAGAAAAGGTAGGAAAACGAGAGATAAGTAGGAAAGGAAGTAAAGCAAGAAGATGGCTGATGATGGGCAGTGAGGGGCAGAGACATACGGTGGAAGCCGGGAAGGCGACGATAATGCAGCGGACCGGGCTGACCGCTAGGGACCTTAGGATTCTTGATCCTATGTTGTCATACCCTTCAACTATTATGGCTCGTGACAAAGCAATGGTCTTAAACTTGGAACAAATAAAGGCTATTGTTACTGCACATGAGGTTCTTTTGCTCAATTCTAGAGACCCCTCTGTTGTTCCTTTTGTTGAACAACTTCATGCAACAATTCTTCATCACCACACTGCTATTATTCATCATTCTCGAGATGATCAAGAAAAGAAGGATGAGGATGAAATAAAGCAAGTTAACAACAATAAGAAGATTATTCCATTTGAGTTTGTGGTGTTGGAGGCATGTCTTGAAGATGTTATAAGTTCCTTAGAAAATGAGGCCAATATATTGGAACTTGAGGCTTATCCTGCCCTAGATAAGCTAACCTCAAAGATTAGTACTCTTAATTTGGAACGTGTTCGCCATGTTAAAAGTCGATTAGTTGCCTTAACTGCTCGTGTTCAAAGGGTAAGGGACGAATTAGAAAAATTGCTAGATGATGATGGAGACATGGCTGAACTATATCTTACAGATAAATTGTCTCAACAGAAGTCTGAAAATTCTTCTACATCCTCATCCATGAATAACAATGGGGATGACATCATGATGAATCAAGTTCTTCAACCAAATACACCTGACAGGACTTCGTCCGAAATATCATTAGAACAAGGTCGAGATTTAATCTATCATGAAGACTCTGAAAGTGTTGTTAGTGGCCAAATACCTAAAACCCAGGCCGCTACTGTCAACAGTGATGTAGGAAGTGTTGAGGAGCTTGAGAAGCTCTTAGGAGCATACTTTGTGCAAATTGGTAGCACCCTGAACAAATTATCCATGTTGAATGAATACGTTGAGGACACAGAGGATTACATAAACATTACATTAGATGACAAACAAAACCGCATTCTACAAACTGGAGTACACATAGGCACAATAAGTGTGATCGTGAATAGCTTTATTCTGGTGACAGGTATCTTTGGTATGAATATTGAAATTGAGATATTTCATGCTGAAAAGGATAAGTTGTTCCTTGTGACAATTTTCCTATGCACTGCTGCTTGCTTAATCTTATATCTTCTTGCCATGCTTTGGTACAAGAAGAAAAAAGTGCTATAA 1272 0.3923 MRNERVEKVGKREISRKGSKARRWLMMGSEGQRHTVEAGKATIMQRTGLTARDLRILDPMLSYPSTIMARDKAMVLNLEQIKAIVTAHEVLLLNSRDPSVVPFVEQLHATILHHHTAIIHHSRDDQEKKDEDEIKQVNNNKKIIPFEFVVLEACLEDVISSLENEANILELEAYPALDKLTSKISTLNLERVRHVKSRLVALTARVQRVRDELEKLLDDDGDMAELYLTDKLSQQKSENSSTSSSMNNNGDDIMMNQVLQPNTPDRTSSEISLEQGRDLIYHEDSESVVSGQIPKTQAATVNSDVGSVEELEKLLGAYFVQIGSTLNKLSMLNEYVEDTEDYINITLDDKQNRILQTGVHIGTISVIVNSFILVTGIFGMNIEIEIFHAEKDKLFLVTIFLCTAACLILYLLAMLWYKKKKVL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03272 423 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 9 422 IPR039204 -
Vifa3g03272 423 Pfam CorA-like Mg2+ transporter protein 310 411 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vifa3g03272 423 Gene3D Magnesium transport protein CorA, transmembrane region 103 354 - -
Vifa3g03272 423 CDD Mrs2_Mfm1p-like 24 422 IPR039204 -
Vifa3g03272 423 Gene3D - 7 95 - -
Vifa3g03272 423 MobiDBLite consensus disorder prediction 230 255 - -
Vifa3g03272 423 FunFam Magnesium transporter MRS2-1 12 95 - -
Vifa3g03272 423 Coils Coil 152 172 - -
Vifa3g03272 423 Coils Coil 199 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03272 Vifa-Chr3 938019622 938033403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03272 24 423 MRS2 Gene Family AT3G19640 51.020 2.29e-132 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03272 - - ccaj:109817554 386.341