Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03250 ATGTCAACTGGAAGGAAGGGTCGAGGTCGTCAAAAAATTGAGATGAAAAAGATGAGTAATGAGAGCCACCTGCAAGTTACTTTCTCAAAGCGTCGTAGTGGACTTTTCAAGAAAGCCAGTGAACTTTGCACACTTTGTGGTGCAGATGTTGCTCTTGTTGTATTTTCACCTAGTGAGAAGGTGTTTTCATTTGGTCACCCACATATTGATACGATCATAGATCGTTATCTATCACGGGTCCTACCCCAAAATAATGGCACCGTGCAACTCATTGAGGCTCACCGTAGTGCCAACGTGCGTGAGCTCAATAGTAAGCTGACTGAAATTAATAATACGTTGGACATTGAGAAGAAATATGGTGATGAGCTGGTTCATTTGTTCAAGGAAACTGAAGCTCGATTTTGGTGGGCTTGTCCCATTCATTCGATGAATAGAGTCCAACTTGATCTATTCAAGAGGGCTTTGGAGGAACTTAAGAAACTTGTTGCACAACATTCCGATAGGTTTGTAATTCAGAGTGCACCTACCCAAACTATTCCATTTTTTGTTGGAAATGTTTCCAACTCTAACATGCCTCTTCATCATCAGGAAAATTCTCAACAAGCTCCAATGTTTCAACCACAATTTATTCAGAACCCTATGTTGCAACCCCATTTGTTTGGCTTCAACGATATGGATGGAAATGGCAGATATAGATCATCTGGAATCTTTTGA 714 0.4076 MSTGRKGRGRQKIEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPSEKVFSFGHPHIDTIIDRYLSRVLPQNNGTVQLIEAHRSANVRELNSKLTEINNTLDIEKKYGDELVHLFKETEARFWWACPIHSMNRVQLDLFKRALEELKKLVAQHSDRFVIQSAPTQTIPFFVGNVSNSNMPLHHQENSQQAPMFQPQFIQNPMLQPHLFGFNDMDGNGRYRSSGIF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03250 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa3g03250 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa3g03250 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa3g03250 237 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vifa3g03250 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vifa3g03250 237 PANTHER MADS BOX PROTEIN 10 165 - -
Vifa3g03250 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vifa3g03250 237 Coils Coil 148 168 - -
Vifa3g03250 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vifa3g03250 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vifa3g03250 237 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Vifa3g03250 237 Gene3D - 88 174 - -
Vifa3g03250 237 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03250 Vifa-Chr3 928783373 928784086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03250 5 189 Type I MADS-box Gene Family AT5G60440 51.596 2.87e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g03250 SRF-TF 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03250 - - mtr:11438274 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03250 3 928783373 928784086 Vifa3g03250 3 928783373 928784086 ECH