Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03249 ATGAACACAGTTAACCAAAAAAAGAAAACCATGGGACGCAAGAAAATCGAAATCAAGAAAGTCGAAAAAGAAACCAACAAACAAGTAACATTCTCGAAAAGAAGATCCGGTATATTCAAAAAAGCTTGCGAACTTTGCCTCTTAAGCGATGTTAACCTAGCCATCATTGTGTTTTCTCCTGCTGATAAACTATTCTGTTGCGGTCGACCAAACACTGACGCAATCCTCAACAGTTATATCAAAGGAACCACTGAGTTTGAGGATCAGAAGTCCACCGGAGATTCCATGATCGGTGAGCAGTATAATAGAGAATATGAAGAGGCACTAAAAATGCTGGAAATGGAGAAGAAGAAACTTGCGGATGTTGAGAATTTGGCTAGGGATTGGAATAGAGTTGGATGGTGGAATGATTCTATTGATGATATGAGTAGTGAACAGCTTGAACAGTTTATGATGTCGATTTTTGAGTTAAGGAAGAAGCTTGCTGAAAAAGAACATGAACGTCTTATGATGTTTTCTAGGTGA 525 0.3848 MNTVNQKKKTMGRKKIEIKKVEKETNKQVTFSKRRSGIFKKACELCLLSDVNLAIIVFSPADKLFCCGRPNTDAILNSYIKGTTEFEDQKSTGDSMIGEQYNREYEEALKMLEMEKKKLADVENLARDWNRVGWWNDSIDDMSSEQLEQFMMSIFELRKKLAEKEHERLMMFSR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03249 174 Coils Coil 98 132 - -
Vifa3g03249 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 65 IPR002100 GO:0003677|GO:0046983
Vifa3g03249 174 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vifa3g03249 174 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vifa3g03249 174 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vifa3g03249 174 Gene3D - 23 107 IPR036879 GO:0003677|GO:0046983
Vifa3g03249 174 SUPERFAMILY SRF-like 11 81 IPR036879 GO:0003677|GO:0046983
Vifa3g03249 174 Coils Coil 4 24 - -
Vifa3g03249 174 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vifa3g03249 174 PANTHER MADS BOX PROTEIN 13 163 - -
Vifa3g03249 174 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03249 Vifa-Chr3 928396178 928396702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03249 8 159 Type I MADS-box Gene Family AT5G60440 38.994 6.08e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g03249 SRF-TF 4.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03249 - - cam:101502875 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03249 3 928396178 928396702 Vifa3g03249 3 928396178 928396702 ECH
Vifa3g03251 3 928894403 928895117 Vifa3g03249 3 928396178 928396702 PCT