Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03247 ATGATGAATACAGTAGATGAAAGAAAGAAAAACACAGGGCGCAAGAAGATCGATATCAAGAAAGTTGAAAAAAATTCCAACAAGCTAGTGACATTCTCAAAAAGAAGACAAGGTTTATTCAAAAAAGCCACTGAACTTTGTGTCTTATGCGATGTTAATATAGCCATGATTGTGTCTTCTCCTGCTGATAAACTATTCGCTTTCGGCCAACCCGACACAGACATAGTCCTCAACAACTACATCCATGGAACCGCTGAGTTTGAAGATCAAGAGTCTGAAAGAATTTCTTCAATCTATGAAGAGTATAATAGAGAACATGAAGAGGCACTAAAGACGTTGGAATTGGAAAAGAAAAAATTAGTAGAAACTGAAAAATCGGCTAGGGTTTCCAATAGAGGTGAATGGTGGAATGATTCTATTGATGATATGAATAGCGAACAGCTTCAACAATTTATGATGTCGATTTATGAGTTTAGGAAGAAGCTTGCTGAAAAGGAATATGAACATCCGAAGATGATTTCCATGTAG 528 0.3636 MMNTVDERKKNTGRKKIDIKKVEKNSNKLVTFSKRRQGLFKKATELCVLCDVNIAMIVSSPADKLFAFGQPDTDIVLNNYIHGTAEFEDQESERISSIYEEYNREHEEALKTLELEKKKLVETEKSARVSNRGEWWNDSIDDMNSEQLQQFMMSIYEFRKKLAEKEYEHPKMISM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03247 175 FunFam Agamous-like MADS-box protein AGL62 24 90 - -
Vifa3g03247 175 PANTHER MADS BOX PROTEIN 14 163 - -
Vifa3g03247 175 Coils Coil 99 123 - -
Vifa3g03247 175 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Vifa3g03247 175 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Vifa3g03247 175 SUPERFAMILY SRF-like 13 82 IPR036879 GO:0003677|GO:0046983
Vifa3g03247 175 Gene3D - 24 119 IPR036879 GO:0003677|GO:0046983
Vifa3g03247 175 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Vifa3g03247 175 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Vifa3g03247 175 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Vifa3g03247 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03247 Vifa-Chr3 927845118 927845645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03247 9 160 Type I MADS-box Gene Family AT5G60440 38.365 5.22e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g03247 SRF-TF 5.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03247 - - cam:101502875 191.045