Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03246 ATGATGAATACAGTAGATGAAGGAAAGAAAAACACAGGGCGCAAGAAGATCGATATCAATAAAGTTGAAAAAAATTCCAACAAGCTAGTGACATTCTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCCACTGAACTTTGTGTCTTATGCGATGTTAATATAGCCATGATTGTGTCTTCTCCTGCTGATAAACTATTCGCTTTCGGCCAACCCGACATAGACATAGTCCTCAAGAACTACATCCATGGAACCACTGAGTTTGAAGATCAAGAGTCTGAAAGAGTTTCTTCAATCTATGAAGAGTGTGATACGGTGGGAGAACTGACTTGA 330 0.3848 MMNTVDEGKKNTGRKKIDINKVEKNSNKLVTFSKRRQGLFRKATELCVLCDVNIAMIVSSPADKLFAFGQPDIDIVLKNYIHGTTEFEDQESERVSSIYEECDTVGELT 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03246 109 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Vifa3g03246 109 SUPERFAMILY SRF-like 13 82 IPR036879 GO:0003677|GO:0046983
Vifa3g03246 109 PANTHER MADS BOX PROTEIN 14 90 - -
Vifa3g03246 109 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Vifa3g03246 109 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Vifa3g03246 109 Gene3D - 24 104 IPR036879 GO:0003677|GO:0046983
Vifa3g03246 109 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Vifa3g03246 109 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Vifa3g03246 109 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Vifa3g03246 109 FunFam Agamous-like MADS-box protein AGL62 24 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03246 Vifa-Chr3 927809896 927810225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03246 9 80 Type I MADS-box Gene Family AT1G65360 56.944 7.88e-26 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g03246 SRF-TF 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03246 - - cam:101502875 128.642