Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03237 ATGCTTCTTCTGCTACTCTTTCTGTTCTTATGGCTTACCTCAATAACTTCCACAACATCATCACTTTCTCCAACTTACAATGCTATTTACTGTCCAAACAACGCAACCTTCGAATCCAACAACAACACAGTACTCAAAACAAATCTCAATGTCCTACTCTCTTCTCTCGTCAGCAACGCCACGCTAGGCGGCGCTGATTCCTACTCAACCTTCATGGGTTTTGGATCAACCAACGCAGTCAACGGTATAGTCAACGGTGTTTTCCTCTGCCGTGGTGACGTTAACTCCACCATGTGTCAGAATTGTGTAACCACTGCAGCTACAAATATAACACGCCTCTGTCCTAACAAAACGGAGTCGATTATATGGTTTGATGAATGCATGCTGCGTTACACTAACCATTATTATAGCCCCACGAGTATCGTTCCAAGAGCGAATTTGAACAACGGGAAGAACATCACTAGCTCGAAATTGGATATCTTTAATGGAATGTTGTTAAGTTTCTTGGATAGGTTGGCTAGTAAAGCTGCAAATCCTCAGACAGTGAAGCAATTCGCGACTGGAGAAGATAACTTCAATTTAAGCATAAGCAACTCTTCGGTTTATGGGTTGGCTCAGTGTGTTAATGGGTTGACGAGTGATCAGTGTGAGCAGTGTTTAGTAAATGCGTCGAGAACTCTTCTCACGTGTTGTGAAGGAAAGCAAGGTGCTAGAGCTCTTCTTGCATGGTGTAATATCAGATATGATTCCTACAAGTTTTACAATACAACCGATGATTCATCTTCGCTTCCTCCTCCTTTTTCTGGAGAGAACAAGTCCGGGTCAAAAACAAGAACGGTCTTGATTGTTGTTCTTGTTACCGGGTCAACAATTCTGTTATGTTTAGGCTGCTATTTCCTCATTAGAAGATCAGCTTGGAAGAAATATAAAACTCTTATGAGAGAAAATTTTGGTGACGAAAGCGCCGCGTTGCAGTCACTACAGTATAGTTTATCGACCATTGAAGCAGCCACAAAGAAATTTTCATCAGAGAATAAAATAGGCAGGGGAGGATTTGGAGAGGTTTACAAGGGTATTCTTATAGATGGAAGGCAAATAGCGGTGAAAAAGCTATCTCGAAGTTCAGGACAAGGTGGAGTAGAGTTCATAAATGAGGTTTTACTGATAGCCAAACTTCAACATAGAAATTTGGTAACCTTAACAGGCTTTTGCTTGGAAGACCAAGAGAAAATGCTCATTTACGAATATGTGCCCAACAAAAGTCTCGATTACTTTCTATTTGATCGCAACAAGGCTAGACTGTTACACTGGTTTGAACGTTATAAAATCATTGAAGGAATTGCAAATGGAATACATTATCTACACAACCATTCAAGGTTGAAGATTATTCATCGTGATCTCAAGCCTAGTAATGTATTGTTAGATGATAATATGAATCCTAAAATATCTGATTTCGGTATGGCAAGAATTGTGGCTCTAGATCAAGATCGAGGCAGCACAAATAGAATTGTTGGAACATATGGCTATATGTCTCAAGAATATGCAATGCATGGACAATTTTCAGAAAAATCAGACGTATTTAGTTTTGGAGTCATAATTTTGGAGATCATTAGTTCAAAAAAGAATGCTCGTTCTCTTTTATCAGATGGCGATGATGACCTCTTGAGTTATGCTTGGAAACAATGGAGGGATCAAACACCATTAGAACTAATAGACCAAGATATAAAAGAATCATGCAATGATAGTGAAGTGCTTAAGTGTATTCAAATTGGTTTATTATGTGTTCAAGAGAAACCTGATGATAGACCTACAATGGCATCAGTTGTTTCGTATCTCACTAGCCCTTCAGCGGAGTTGCCATTTCCAAGAGAGCTGACAGGGTCTATGCACAGTGGAATACTGCAAAAGATGGTAGGAGGGGGTTTGAGTTCGACTTCTATATCAACATTAAATGAAATAAGTTCATCAGTAAGTTCTGCATTCTCTGCCAGTGCTTAG 1998 0.3954 MLLLLLFLFLWLTSITSTTSSLSPTYNAIYCPNNATFESNNNTVLKTNLNVLLSSLVSNATLGGADSYSTFMGFGSTNAVNGIVNGVFLCRGDVNSTMCQNCVTTAATNITRLCPNKTESIIWFDECMLRYTNHYYSPTSIVPRANLNNGKNITSSKLDIFNGMLLSFLDRLASKAANPQTVKQFATGEDNFNLSISNSSVYGLAQCVNGLTSDQCEQCLVNASRTLLTCCEGKQGARALLAWCNIRYDSYKFYNTTDDSSSLPPPFSGENKSGSKTRTVLIVVLVTGSTILLCLGCYFLIRRSAWKKYKTLMRENFGDESAALQSLQYSLSTIEAATKKFSSENKIGRGGFGEVYKGILIDGRQIAVKKLSRSSGQGGVEFINEVLLIAKLQHRNLVTLTGFCLEDQEKMLIYEYVPNKSLDYFLFDRNKARLLHWFERYKIIEGIANGIHYLHNHSRLKIIHRDLKPSNVLLDDNMNPKISDFGMARIVALDQDRGSTNRIVGTYGYMSQEYAMHGQFSEKSDVFSFGVIILEIISSKKNARSLLSDGDDDLLSYAWKQWRDQTPLELIDQDIKESCNDSEVLKCIQIGLLCVQEKPDDRPTMASVVSYLTSPSAELPFPRELTGSMHSGILQKMVGGGLSSTSISTLNEISSSVSSAFSASA 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03237 665 FunFam cysteine-rich receptor-like protein kinase 10 417 619 - -
Vifa3g03237 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vifa3g03237 665 ProSiteProfiles Gnk2-homologous domain profile. 25 136 IPR002902 -
Vifa3g03237 665 Pfam Salt stress response/antifungal 159 251 IPR002902 -
Vifa3g03237 665 Pfam Salt stress response/antifungal 31 133 IPR002902 -
Vifa3g03237 665 ProSiteProfiles Gnk2-homologous domain profile. 141 253 IPR002902 -
Vifa3g03237 665 Gene3D Phosphorylase Kinase; domain 1 304 416 - -
Vifa3g03237 665 Gene3D Transferase(Phosphotransferase) domain 1 417 619 - -
Vifa3g03237 665 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 658 - -
Vifa3g03237 665 ProSiteProfiles Protein kinase domain profile. 341 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03237 665 CDD STKc_IRAK 347 613 - -
Vifa3g03237 665 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Vifa3g03237 665 SMART serkin_6 341 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03237 665 Gene3D - 144 253 IPR038408 -
Vifa3g03237 665 Gene3D - 25 136 IPR038408 -
Vifa3g03237 665 Pfam Protein tyrosine and serine/threonine kinase 344 612 IPR001245 GO:0004672|GO:0006468
Vifa3g03237 665 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 302 416 - -
Vifa3g03237 665 SUPERFAMILY Protein kinase-like (PK-like) 326 622 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03237 Vifa-Chr3 926721123 926723645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03237 3 623 Receptor kinase-like Gene Family AT4G05200 45.383 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa3g03237 PK_Tyr_Ser-Thr 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03237 - - ccaj:109813299 846.654