Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03235 ATGTTTTCTTCGCGTTGCCTTCTGTTTTTACTTCTTCCTCTGTTTTTCACACTAAACTCTCAAGCCAAGGACCAACTAGTTTTCCGCTACCACGAATGTAACAATGATCTCGGAAACTTTACCGACGGTAGTACCTACCAAGACAACCTCGCCGCCGTTCTAAAAATTATATATTCCGACAGAGAAATAGACTATGGGTTCTACAATTTCTCATATGGCGATGAACCTGACATAGTAAACGCAGTCGGATTTTGCAGAGGAGACATTAATCCAAACGACTGCCGCGACTGCTTGAAAACCTCTGCAGTACTTCTCACAGATCGGTGTCGAATACAAAAAGAGGCAATTGGTTACTACGACATATGCACCTTACGCTATTCGTACACATCAATTTTTGGTGTCATGGATACTGATACTGGTAAGTATTTCAATATCAAAAGCAAAACAGTGATGGATGATGCATTTAATACAACACTTAATGGCTTGTTGGATGAACTTAAAAGCATGGCAGCGGAAGGAGATTGGCGTAAGAAGTTTGGTGAAAAGAGTGTGAAAGTAATTGAATCAAATAGTAGTAATAATGATACTATATATGGATTGGTTCAGTGTACACCAGATTTGACAAAACAAAATTGTACTAAATGTTTAGATTTAGCTTTCCCAGATCTTTCAAGGTGGTGTCCAAAAATGAAAGTTTGTTTGTATCTTGGACCAAGTTGTTCGGTTAGATATGATATAGTTCAGTTTTATCAGTCTATAGTTAATAGTGCAGAGTCACCAGCACCACAACCTTCTTCCCAAGCAATTTCTCCTGAACCTTCATCAGACAACTCTACCACCAACCCTTCTAATACTAAAGGAAAGAAGAGGGTATTACGAACGGCCATCGCTATCGTTTTAGCATTGGTTGTAGCTGCCATACTAGTTGTTGGTGGATGTATTTATTGTGAAAGGAGAAAGCCAAAACCCCAATATACTGCTGAAATTCAAGTCCAAGAGACAAATGAAGATGAAGATGAAGTTAAAGCTGGCAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAGCCATCAAATTAGCTACAAACAACTTTTGTGATGCAACTGCGCTTGGTCAAGGTGGATTTGGAACTGTTTATAGGGGTACACTAGATGGACTTGATGTTGCTATTAAAAGGTTAGCTAACAATTCTAAGCAAGGAGAAACAGAATTCAAGAATGAAGTATTACTTACGGGGAAGCTTCAACATCGAAATTTAGTTAAACTACTAGGTTTTTGTTTACATAGAGGAGAAAGACTGCTAATATACGAGTTTGTCCCCAATAAAAGTCTCGACTATATCATATTTGATCCAATCAAACGTGCGGATTTAAATTGGGAAAGACGCTTTAAAATCATTAAAGATATTGCGCGCGGTCTTCTTTATCTTCACGAGGATTCTCGACTACAAATTGTTCACCGTGATCTCAAAACAAGTAATATTCTACTTGATAATGAAATGAATCCAAAAATTACAGATTTTGGCATTGCAAGGTTGTTTGCCCCCAATCAAACCCATGGCATGACAAGTACGGTTATTGGAACTTATGGATATATGGCTCCAGAATATATCAAACATGGAGAATTCTCAATCAAATCAGATATATTCAGTTTTGGTGTAATTGTTTTGGAAATTGTCTGCGGTCGGAGAAACACTAAGTCTCGTGACGGGGAGAATATAAAAGATCTATTAGATAATGCATGGGAAAACTGGAAGACAGGGACAAGTTTGGATATTGTAGATCCAATGTTAGAGCAAGATTTAAATAAGGATGAAAAAAAGAGATGCATCCATGTTGGATTACTCTGTGTTCAAGAAGATATAGATGTGAGACCAACTATGAGTTCTGTTTTACTAATGCTTAGTAGCATATATCTCCCACTTCCAGAACCTTCAGAACCTCCATTTTTAATGCAACCCAAAAGAGCATTATCTATATCCTTAAGTGACAAATATTCAGGTCCTACAAAGTCAAGTGATTCAGGATCAGGAAGTCAGTTTACTCAAGTATCAACAAGGAAGTCCTCATCAGTGACAGATTAA 2091 0.3745 MFSSRCLLFLLLPLFFTLNSQAKDQLVFRYHECNNDLGNFTDGSTYQDNLAAVLKIIYSDREIDYGFYNFSYGDEPDIVNAVGFCRGDINPNDCRDCLKTSAVLLTDRCRIQKEAIGYYDICTLRYSYTSIFGVMDTDTGKYFNIKSKTVMDDAFNTTLNGLLDELKSMAAEGDWRKKFGEKSVKVIESNSSNNDTIYGLVQCTPDLTKQNCTKCLDLAFPDLSRWCPKMKVCLYLGPSCSVRYDIVQFYQSIVNSAESPAPQPSSQAISPEPSSDNSTTNPSNTKGKKRVLRTAIAIVLALVVAAILVVGGCIYCERRKPKPQYTAEIQVQETNEDEDEVKAGNDLKVGDLLQFDFEAIKLATNNFCDATALGQGGFGTVYRGTLDGLDVAIKRLANNSKQGETEFKNEVLLTGKLQHRNLVKLLGFCLHRGERLLIYEFVPNKSLDYIIFDPIKRADLNWERRFKIIKDIARGLLYLHEDSRLQIVHRDLKTSNILLDNEMNPKITDFGIARLFAPNQTHGMTSTVIGTYGYMAPEYIKHGEFSIKSDIFSFGVIVLEIVCGRRNTKSRDGENIKDLLDNAWENWKTGTSLDIVDPMLEQDLNKDEKKRCIHVGLLCVQEDIDVRPTMSSVLLMLSSIYLPLPEPSEPPFLMQPKRALSISLSDKYSGPTKSSDSGSGSQFTQVSTRKSSSVTD 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03235 696 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 131 - -
Vifa3g03235 696 MobiDBLite consensus disorder prediction 665 696 - -
Vifa3g03235 696 Pfam Protein kinase domain 371 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03235 696 MobiDBLite consensus disorder prediction 664 696 - -
Vifa3g03235 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Vifa3g03235 696 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 178 682 - -
Vifa3g03235 696 SMART serkin_6 367 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03235 696 Gene3D Transferase(Phosphotransferase) domain 1 442 643 - -
Vifa3g03235 696 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 330 441 - -
Vifa3g03235 696 FunFam cysteine-rich receptor-like protein kinase 10 442 644 - -
Vifa3g03235 696 Gene3D - 25 130 IPR038408 -
Vifa3g03235 696 Gene3D - 140 249 IPR038408 -
Vifa3g03235 696 Gene3D Phosphorylase Kinase; domain 1 326 441 - -
Vifa3g03235 696 ProSiteProfiles Protein kinase domain profile. 367 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03235 696 MobiDBLite consensus disorder prediction 260 286 - -
Vifa3g03235 696 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Vifa3g03235 696 SUPERFAMILY Protein kinase-like (PK-like) 353 671 IPR011009 -
Vifa3g03235 696 CDD STKc_IRAK 373 640 - -
Vifa3g03235 696 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Vifa3g03235 696 Pfam Salt stress response/antifungal 152 245 IPR002902 -
Vifa3g03235 696 ProSiteProfiles Gnk2-homologous domain profile. 137 249 IPR002902 -
Vifa3g03235 696 ProSitePatterns Protein kinases ATP-binding region signature. 373 394 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03235 Vifa-Chr3 926437381 926440705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03235 36 684 Receptor kinase-like Gene Family AT4G21410 42.576 1.03e-170 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa3g03235 Pkinase 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03235 - - tpra:123882259 992.26