Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03234 ATGCATATCTTCAAATCATCAACAACCACAACAAGCCGATTGATTCTACTTGCATCCTTGTTATCTTCACTTCCATTTCCATTTGAAGCTTCTCCAATATACAACTACCACGCCTGCACAGACACTTCATATTACAAACCAAACTCAATTTTCCAAACCGCTTTAAAAACTCTTCTCTCTTCCCTCATCTCAAACTCCACCCTCCACAACGGTTTCTACACCGTCCACATCCCTCTCTTCAATTCCCCCAACGACTTAAAAGGACTCTTCCTCTGCCGCGCAGACATCACTCCCTCCCTATGTCAACGCTGTGTAACAGCAGCAGCTACTAACATCACGAATTTGTGTAACAATCAGACAGAATCTATCGTCTGGTACGACGAATGCTTGTTGCGTTACTCCAATGATTCCTTCTTGAATCATATAGTTCCTGCAGTCACCTTGGCATCTGATAAGAGTGTTCCTGATTCAGAAGTCTCTCAATTCAGTGATTTCCTTGCTAACCTTTTGAAGGGTTTAGTATATGAAGCTGTGAATTCTCCTTCGGGTCAGAAATTTGCTGCAAAAGAAGAAAGTTTCTTGGCTTCTATGAAGGTATATTCTTTGGCGCAGTGTACACCAGATTTATCTACTTTTGACTGTAACACTTGTTTACAAGGTGCTATTAGTTCTATTGGAAATTGTTGTGATGGGAAAAAAGGTGCAAGATCACTTCTTCCGAGTTGTAATATTCGATATGAGTTTTACTCTTTTTACAACGGTTCTGCTGTTTCTACACAGCCAAAACTTCCTCCTCCTTCTTCAGGAAAGAGCAATGTCGCTATGATTATTGGGATTGTTGTTGCAATTGTTGTGGCTGTGGGACTTTTGATTTTTTGCTGCTATTTCCTGCGTAAGAGGGCGAGGAAGAAGTATGAGTATAATAGTACATTTATCCAGGGTTCATCTTCGATTCGGAGGGAGGATCTTACTGATATAGAGTGTTTGCAATTTGACTTTGCCACAATTGAAGCTGCCACAAATTGTTTCTCCGATGAGAACAAGATTGGCCAAGGTGGGTTCGGTGTGGTTTATAAGGGTATTCTTCCCGATGGACATGAGATAGCTGTGAAGAGGTTGTCGGTAACCTCTTTGCAGGGTGCAATTGAGTTCAAAAATGAAGCTTCCCTTGTGGCAAAGCTTCAACATAGAAATTTAGTGAGGATGTTTGGATTTTGTTTGGAGGGGAGGGAGAAGATTCTTGTCTATGAGTACATACCAAATAAGAGCCTTGATCACTTTCTATTCGATCCTGCTAAGCAAAGGGAGTTAGATTGGTCAAAACGCTACAAGATTATAGTTGGCATTGCTCGAGGGATTCTTTATCTCCATGAAGACTCCCAGCTTAGAATTATTCATCGTGATCTCAAAGCTAGCAATGTTCTATTAGATGAAAATATGAATCCAAAGATTTCAGATTTTGGGATGGCAAGAATTTTCCAAGGAGATCAGACTCAAGTAAATACCGGACGGATAGTGGGAACTTACGGTTACATGTCTCCAGAATATGCAATGCGTGGACAATTTTCTATGAAGTCAGATGTGTTCAGTTTTGGTGTCTTAGTTTTGGAAATTGTGAGTGGCAAGAAGAATACCGATTTAAATCAATGGAATGATGCTGATGACCTCTTAAACTACGCTTGGAAAAAATGGTCCGAGCAAACACCTTCGGAGTTAATTGATCCAATGCTGCGCGATTCTTATTCAAGAAACGAAGTTATGAGATGCATCCATATCGGTTTATTGTGTATTCAGGAAAGTCCACATGATAGACCTTCCATGGAGACTGTTGCACTTATGCTCAACAGTTATTCAGTTACGCTGTCATTACCTCGACAGCCACCGTCTTTCTTTCGTGGAGGAGCACCCGACAGAATGAAGCAAGGGTTTAATTCTGATCAGTCTACAACAGGATCAATTCCATGGTCTGTAAATGATGTATCCATTACTGAAGTACACCCTCGATAA 2007 0.4081 MHIFKSSTTTTSRLILLASLLSSLPFPFEASPIYNYHACTDTSYYKPNSIFQTALKTLLSSLISNSTLHNGFYTVHIPLFNSPNDLKGLFLCRADITPSLCQRCVTAAATNITNLCNNQTESIVWYDECLLRYSNDSFLNHIVPAVTLASDKSVPDSEVSQFSDFLANLLKGLVYEAVNSPSGQKFAAKEESFLASMKVYSLAQCTPDLSTFDCNTCLQGAISSIGNCCDGKKGARSLLPSCNIRYEFYSFYNGSAVSTQPKLPPPSSGKSNVAMIIGIVVAIVVAVGLLIFCCYFLRKRARKKYEYNSTFIQGSSSIRREDLTDIECLQFDFATIEAATNCFSDENKIGQGGFGVVYKGILPDGHEIAVKRLSVTSLQGAIEFKNEASLVAKLQHRNLVRMFGFCLEGREKILVYEYIPNKSLDHFLFDPAKQRELDWSKRYKIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMARIFQGDQTQVNTGRIVGTYGYMSPEYAMRGQFSMKSDVFSFGVLVLEIVSGKKNTDLNQWNDADDLLNYAWKKWSEQTPSELIDPMLRDSYSRNEVMRCIHIGLLCIQESPHDRPSMETVALMLNSYSVTLSLPRQPPSFFRGGAPDRMKQGFNSDQSTTGSIPWSVNDVSITEVHPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03234 668 ProSiteProfiles Gnk2-homologous domain profile. 142 251 IPR002902 -
Vifa3g03234 668 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Vifa3g03234 668 Pfam Salt stress response/antifungal 157 248 IPR002902 -
Vifa3g03234 668 Pfam Protein tyrosine and serine/threonine kinase 346 611 IPR001245 GO:0004672|GO:0006468
Vifa3g03234 668 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Vifa3g03234 668 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Vifa3g03234 668 FunFam cysteine-rich receptor-like protein kinase 10 419 621 - -
Vifa3g03234 668 Gene3D - 33 138 IPR038408 -
Vifa3g03234 668 Gene3D - 146 251 IPR038408 -
Vifa3g03234 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vifa3g03234 668 FunFam Cysteine-rich receptor-like protein kinase 10 145 251 - -
Vifa3g03234 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 138 - -
Vifa3g03234 668 SUPERFAMILY Protein kinase-like (PK-like) 328 632 IPR011009 -
Vifa3g03234 668 Gene3D Transferase(Phosphotransferase) domain 1 419 622 - -
Vifa3g03234 668 CDD STKc_IRAK 349 615 - -
Vifa3g03234 668 FunFam Cysteine-rich receptor-like protein kinase 10 301 418 - -
Vifa3g03234 668 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 44 666 - -
Vifa3g03234 668 Gene3D Phosphorylase Kinase; domain 1 307 418 - -
Vifa3g03234 668 ProSiteProfiles Protein kinase domain profile. 343 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03234 668 SMART serkin_6 343 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03234 Vifa-Chr3 926097419 926100070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03234 4 668 Receptor kinase-like Gene Family AT4G05200 47.445 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa3g03234 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03234 - - cam:101512516 1009.59