Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03233 ATGAATTCCTTCAACCTTCTATTTCTGTTCATCTTCCTCAGCATCAACTCAACTACACAAGCACAGAACCCAACTTACCTCTACCAATCCTGCACAAAAAACCAAACCAACCCCAACAGCCTCTACCACACAAAACTCAAAACCCTTTTCTCTTCACTCTCTTCCAACGCCACCAACAACAACGAATTCTACAAAACCACAATCCCTAGCAAAAACCCTTCAAACACCGCATACGGTCTATTCATGTGCAGAGGCGACGTTTCCTCTCCCCTCTGCCAACAATGCGTCGCAAACGCAACACAAAAACTATCAACAAACACAGATTGTTCCTCATCAAAACAAGCTGTTATCTGGTACGACGAGTGCATGGTTCGGTACTCCAACACCTCTTTTTTCTCCACCGTCGCTACAAGCCCAGATAAAGCTGCGAATTCTTCTGTCGATGCTAAGAAATATGCAACAAAGGAAGCTAGGATCTCTGGATTTCAGACGCTGTACTGTATGGCTCAGTGTACAGATGATTTATCTCAACTAGATTGCAGTTCGTGTCTTAGTGATGCCATTGGAGCTCTTCCACAGTGCTGTAATGGAAAGCAAGGAGGAAGAGTTTTGTTTCCTAGCTGTAATATTAGATATGAATTGTACCCTTTTTATGGAAACGTTACTCTGTCACCGGCGCCTTCAACATCACCTGCATCTTCAGCAGCACCAGGGATTGTTCCTTCAACAAACACTCCTAATTTGGGAGGAAGTAGTGGGATCTCATCAGGTACAATTGTTGCAATTGTGGTTCCAATTACAGTGGTGGCACTGCTATTTATTGTAGGAATTTGTTTCTTATGCATAAGAGGGCGGAAGAAGAAGCATGACTCTGCTGCAGCACAGGATCCGAAAACTGAAACCGATATTACCACTGTGGAATCTTTGAGATTTGATTTGAGTACACTTGAAGAATCCACAAACAAATTCTCAGAAGCTAATAAGCTAGGTGAAGGTGGATTTGGCGAGGTTTACAAGGGCGTGCTTCCGAGCGGACAAGAAATAGCTGTCAAGAGACTCTCTAAACACTCGGGACAAGGCGGAGAACAATTTAAGAATGAAGTTGAACTGGTTGCACAACTTCAACATAGAAATTTAGCTAGGCTTCTGGGATTTTGCTTGGAAAGAGATGAAAAGATACTTGTTTATGAATTTGTAGCCAACAAAAGTCTTGACTATATTCTTTTTGATCCTGAAAAACAAAGGCTATTGGATTGGACAAGGCGTTACAAGATTATTGGAGGGATCGCTCGAGGCATTCAATATCTTCATGAAGATTCAAGGCTTAAAATAATTCATCGGGATCTCAAAGCTAGCAACATATTGTTGGATAAAGATATGAATCCAAAAATCTCCGATTTTGGTATGGCAAAATTATTTGGAGTGGATCAAACTCAAGGAAATACCAGCAGGATTGTAGGGACATATGGTTACATGTCTCCGGAGTATGCAATGCATGGAGATTTCTCTATTAAGTCTGATATATACAGTTTTGGAGTCCTCGTTATGGAGATTATAAGTGGCAAGAAGAACAGCTCTTTCTATGAAACAGGTGTTGCCGAGGATTTAATTTCCTATGCATGGAAACTTTGGAAGAATGGAACACCTTTGGAATTGGTCGATCACACAATAAGAGAATCCTATACTCCAAATGAAGCTATAAGATGCATCCATATTGGTTTATTATGTGTGCAAGAAGATCCGGACGATAGACCTACAATGGCAACAATAGTGCTCATGCTAGATAGCCACACTGTTACTTTACCGGTAGCGAAGCAGCCTGCATTTTTTCTACAGAGTGGCGCTGATCCGCACATGCCAACAATACAGATTAGTCAATCTGATAATACCAATTGA 1896 0.4135 MNSFNLLFLFIFLSINSTTQAQNPTYLYQSCTKNQTNPNSLYHTKLKTLFSSLSSNATNNNEFYKTTIPSKNPSNTAYGLFMCRGDVSSPLCQQCVANATQKLSTNTDCSSSKQAVIWYDECMVRYSNTSFFSTVATSPDKAANSSVDAKKYATKEARISGFQTLYCMAQCTDDLSQLDCSSCLSDAIGALPQCCNGKQGGRVLFPSCNIRYELYPFYGNVTLSPAPSTSPASSAAPGIVPSTNTPNLGGSSGISSGTIVAIVVPITVVALLFIVGICFLCIRGRKKKHDSAAAQDPKTETDITTVESLRFDLSTLEESTNKFSEANKLGEGGFGEVYKGVLPSGQEIAVKRLSKHSGQGGEQFKNEVELVAQLQHRNLARLLGFCLERDEKILVYEFVANKSLDYILFDPEKQRLLDWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKASNILLDKDMNPKISDFGMAKLFGVDQTQGNTSRIVGTYGYMSPEYAMHGDFSIKSDIYSFGVLVMEIISGKKNSSFYETGVAEDLISYAWKLWKNGTPLELVDHTIRESYTPNEAIRCIHIGLLCVQEDPDDRPTMATIVLMLDSHTVTLPVAKQPAFFLQSGADPHMPTIQISQSDNTN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03233 631 FunFam cysteine-rich receptor-like protein kinase 10 399 601 - -
Vifa3g03233 631 Gene3D Phosphorylase Kinase; domain 1 284 398 - -
Vifa3g03233 631 SMART serkin_6 323 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03233 631 FunFam Cysteine-rich receptor-like protein kinase 25 129 217 - -
Vifa3g03233 631 Pfam Protein tyrosine and serine/threonine kinase 326 593 IPR001245 GO:0004672|GO:0006468
Vifa3g03233 631 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Vifa3g03233 631 SUPERFAMILY Protein kinase-like (PK-like) 308 613 IPR011009 -
Vifa3g03233 631 FunFam Cysteine-rich receptor-like protein kinase 10 284 398 - -
Vifa3g03233 631 Pfam Salt stress response/antifungal 141 215 IPR002902 -
Vifa3g03233 631 Pfam Salt stress response/antifungal 31 128 IPR002902 -
Vifa3g03233 631 Gene3D - 133 217 IPR038408 -
Vifa3g03233 631 Gene3D - 23 131 IPR038408 -
Vifa3g03233 631 ProSiteProfiles Gnk2-homologous domain profile. 142 217 IPR002902 -
Vifa3g03233 631 ProSiteProfiles Gnk2-homologous domain profile. 24 131 IPR002902 -
Vifa3g03233 631 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 618 - -
Vifa3g03233 631 ProSiteProfiles Protein kinase domain profile. 323 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03233 631 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 24 128 - -
Vifa3g03233 631 CDD STKc_IRAK 329 595 - -
Vifa3g03233 631 Gene3D Transferase(Phosphotransferase) domain 1 399 605 - -
Vifa3g03233 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03233 Vifa-Chr3 926092993 926096370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03233 2 630 Receptor kinase-like Gene Family AT4G05200 52.888 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa3g03233 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03233 - - mtr:25485264 1019.61