Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03232 ATGATTACCAAAATATTAACAAAGAATCTAACACTACAGTTTCTTCTTCTCATAACTCTTACCTTAACCATAACAAAAACCTCTGCATCTGTCTTCAACAACGTTACCTGCACAAACACAAAAACATTCTCACCAAACTCCGCTTTCCATTCCAATCTCAACACGCTTCTCTCTTCCCTCTCTTCCAACGTAATCAACGATGTTAGATTCTTCAACACAACCTCAGGAAACGACTCAAACAAAGTCTACGGTCTCTACATGTGTCGTGGAGATGTTCCTTTCGCTTTATGTAGAGAGTGTGTTGGTTTTGCGACGCTCAAGATTCCATCATCATGTCCTTCTTCACAAGAAGCTGTTATCTGGTACAACGAGTGTTTGTTAAGATACTCGTATCGATTCATCTTCTCCAAAATGGAAACATGGCCTAGATACAAGATCGAGATTCCAATGGGGGACCCTGGTTTGTTACGTAGTAGAGGCTTCTATTCTGGTTTGAGATCTGTATTGAATGAACTTCCGAAAGATGCTGCGGTTTCTCTTTCTGGTTTTAGCAAATATGCTGTTAAGCAAGAAAATGCTTCTGGTAGTGTGACGCTTTATGGTATTGCTCAGTGTACGCCGGACTTGTCGGCCGGTGATTGTAGGCGGTGTGTCGAGGTTGCGGTGGCGGAGTTTCCTAAGGCTTGTTGTGGTGGTAGCATAGGTGAAACTGTTTTGTTTCCGAGCTGTTTTGTTAGGTATGAGACTTATCCGTTTTATCAGCATTCGGGCACTTCGGCATCATTAACAGCTTCAGTTAGCGGAGGAAGAAATATTCCAACACAAGTGATTGTCATTATTGTTGTTTTGGTCGTCATTTTGGTGGCAATTTTTTGCATTGGCTGCTGTTTGTTATGCATAAAATCGAAGAAAAGACACAAGACCAGTGACAGAGAAAATCTTGTGTTTGAATTCAATAACTCGGAGTCACTGGAATTCGATTTTGCTACAATTGAAATAGCAACAGACATGTTTTCTGAGGATAGCAAAATAGGCAAAGGTGGATATGGACAAGTTTACAAGGGAATTCTTCCTAGTGGACAAGAAATAGCTGTGAAGAGACTGTCCAAAACTTCAGGTCAAGGAGCAGAAGAGTTCAAAAATGAAGTCATGTTAATAGCCAAACTTCAACACAGAAATTTGGTGAGACTAATTGGATTTTGCCTTGAAGAACAAGAAAAGATACTTATCTATGAATATGTGCCGAACAAAAGTCTTGATCACTTCCTATTTGATTCTAAGAAGCAAAAGCAGTTAACTTGGCCGGAACGGTATAGTATCATTAAAGGGATTGCTAGAGGAATTCTTTATCTTCACGAAGATTCTCGTCTCAAGGTTATACATCGTGATATTAAACCAAGCAATGTTCTTCTAGATAACAATATGATTCCGAAAATATCTGATTTTGGCATGGCAAGGATGGTAGATATAGAGCAAATTCAAGGATTTACAAATAGAGTTGTGGGCACATATGGATACATGTCTCCAGAATATGCAATGCACGGACAATTTTCAGTGAAATCTGATGTTTTCAGTTTTGGAGTTATGGTTCTCGAGATTATCAGTGGAAAAAAGAATTCTTGTACATTTGAGTCATGTCGTATTGACGATCTATTGAGTTATGCTTGGAACCAATGGAAAGGTGAATCACCATTTGAGATGTTGGATCCAATAGTGCAAGAATCTTATGCTCCAAATGAACATTTTTCATGCATGGAAGAACAAGAAGAAATTCAGCTGAACATCAATCATATTCAGAATTTACACTGA 1809 0.3886 MITKILTKNLTLQFLLLITLTLTITKTSASVFNNVTCTNTKTFSPNSAFHSNLNTLLSSLSSNVINDVRFFNTTSGNDSNKVYGLYMCRGDVPFALCRECVGFATLKIPSSCPSSQEAVIWYNECLLRYSYRFIFSKMETWPRYKIEIPMGDPGLLRSRGFYSGLRSVLNELPKDAAVSLSGFSKYAVKQENASGSVTLYGIAQCTPDLSAGDCRRCVEVAVAEFPKACCGGSIGETVLFPSCFVRYETYPFYQHSGTSASLTASVSGGRNIPTQVIVIIVVLVVILVAIFCIGCCLLCIKSKKRHKTSDRENLVFEFNNSESLEFDFATIEIATDMFSEDSKIGKGGYGQVYKGILPSGQEIAVKRLSKTSGQGAEEFKNEVMLIAKLQHRNLVRLIGFCLEEQEKILIYEYVPNKSLDHFLFDSKKQKQLTWPERYSIIKGIARGILYLHEDSRLKVIHRDIKPSNVLLDNNMIPKISDFGMARMVDIEQIQGFTNRVVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKKNSCTFESCRIDDLLSYAWNQWKGESPFEMLDPIVQESYAPNEHFSCMEEQEEIQLNINHIQNLH 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03232 602 SUPERFAMILY Protein kinase-like (PK-like) 309 589 IPR011009 -
Vifa3g03232 602 SMART serkin_6 338 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03232 602 FunFam Cysteine-rich receptor-like protein kinase 10 300 413 - -
Vifa3g03232 602 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 586 - -
Vifa3g03232 602 Gene3D - 30 133 IPR038408 -
Vifa3g03232 602 Gene3D - 156 252 IPR038408 -
Vifa3g03232 602 ProSiteProfiles Gnk2-homologous domain profile. 143 252 IPR002902 -
Vifa3g03232 602 CDD STKc_IRAK 344 587 - -
Vifa3g03232 602 Gene3D Phosphorylase Kinase; domain 1 298 413 - -
Vifa3g03232 602 Pfam Protein kinase domain 339 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03232 602 FunFam cysteine-rich receptor-like protein kinase 10 414 589 - -
Vifa3g03232 602 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Vifa3g03232 602 Pfam Salt stress response/antifungal 160 250 IPR002902 -
Vifa3g03232 602 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Vifa3g03232 602 ProSiteProfiles Protein kinase domain profile. 338 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03232 602 Gene3D Transferase(Phosphotransferase) domain 1 414 599 - -
Vifa3g03232 602 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 30 133 - -
Vifa3g03232 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vifa3g03232 602 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03232 Vifa-Chr3 925810057 925813803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03232 14 585 Receptor kinase-like Gene Family AT4G05200 45.439 2.01e-176 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa3g03232 Pkinase 6.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03232 - - mtr:25485264 969.918