Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03213 ATGGCGATAGATGATGAAGAGAAGAACGAGAATGAACAACAAGACACCAAAACACTCATCTGCGCTCTCAACTTTCTCTCTCGCGACGTTCCTCTTCCCAATCACATCCTCAACTCCGTCTCTTCCATCTATCATCACAGCAATGATGTCAATGGTGACACAGGGAGTTCTGGAGATGATTTAATAACAGATCTTAAAGATGCAATATTGGAACAGCGCCCGAAATGTGCTTCACGTTTCAAATTGGAGGAAGCAATGGAAAACCGTCATCAAAGTCAGATTTGGCATCGGTTAAATGAGCTTGAAGAATTGCCTTCAAGTAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGATTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACAGGAAATTGTTTGATTGGGGCATGATGAGACTGTGCCGTCCGTTCTATGGAGTTGGAGATCCATTTGCCATGGACGCCGATGATCAATTAAGGAAGAAACGGGATTCTGAGAAACTGTCAAGATTAGAAGAGGCAGAGAAAAATCATATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATACTCAATGGTGTCCGCGAGCTCCAGTTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCTGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGTGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTGAATCTAGGAGCAGCCGTTCAACGTCAAAGGGACTTCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAATCGCCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGTGACTCAAGCGATTTACTTGAAGGTCAGCGACAATACAATTCAGCCATACATTCAATTCAGGAAAAGGTAACTGAACAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTGCAATGGATGATTTCTTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACTATTTCTCTCATAGCACATCTTTTGGAATACAAAGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCAACATGGGCTCCTAGCATTAAAGTTATTCTTTATGATGGACGAATGGATGAGAGAAAAGCAATAAAGGAGGAATTTTCAGGAGAGGGGAAATTTAATGTTATGATAACACATTATGATCTTATAATGAGAGACAAAGCATTTCTCAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCCGTTCTAGCAAAAACCTTGGACAATAGCTATAACATCCAACGGAGACTTTTGCTGACTGACCGAGTTGATGTCTCTTTATCAGATGAAGAACAACTATTAATCATTCGGCGTCTGCATCAAGTTATAAGGCCCTTCATATTACGAAGGAAAAAGAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTTTATTATCAACAAGTTACTGATGTAGGCAGAGTTGGTTTGGACAATGGTTCTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGATTATGATATGTATAAATGTAAGGAGGAGATTGTCAGAGCATCGGGTAAATTTGAACTTCTTGACCGTTTGCTTCCAAAACTCCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTCGAAGTTTATTTAAGACTTCATGATTTCAAGTATCTTAGACTTGATGGGTCAACGAAAACTGAAGAAAGAGGTTCTCTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTATTAAGCACCCGGGCTGGCGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCTCATAGAATTGGACAAAAAAAAGAAGTTCGGGTTTTTGTGTTGGTAAGCGTGGGATCAATTGAAGAGGTAATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGACGAGGCTCAAGCTCACTTGGGGCAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTCGAGAAAATGGATGAAGAAAGAAGACAAAAGGAAAACTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGAGTGGGTGTATGCTCCAATTCAAAAGGATGACAAGGCCAAAAGTTTCAGCAGTGGTGTTACTGGAAAGCGAAAAAGAAAAGATGTGATATATGCTGATACATTGAGTGAACAACAATGGATGAAGGCTATGGAGAATGGGGGTGACATGTCAACAGTTTTAGCAAAAGGGAAAAGAAGAGAGCCAAGAGATTATCTCTCATCTGACAACATAGCACAAACCAGTGATGATACAGGGGCAGATGAAAGTTTATATGGGTCAAGGACTACAATTGCCCCTATGGCAAATGAGAGAACAAGTGAAGAGAGTTTCCATAACTCTCCTTCCTCAAAGAGATTCAAGCCTGAAAGAACAAAGTTTCAGAAACAGGCATACGAGGATGTCGGCGGGAGTGGTCTGAACCAGCATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCAAAGCCAGGGTTCATTATCCGATAGTAGAGGACAAAATTCAAATGGAAGAGGAAACTGGAATTGA 3159 0.4112 MAIDDEEKNENEQQDTKTLICALNFLSRDVPLPNHILNSVSSIYHHSNDVNGDTGSSGDDLITDLKDAILEQRPKCASRFKLEEAMENRHQSQIWHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQSKIRSDVSSEYWLNVECAYPDRKLFDWGMMRLCRPFYGVGDPFAMDADDQLRKKRDSEKLSRLEEAEKNHIETTKRRFFAEILNGVRELQLQIQASLKRRKQRNDGVLAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDFKHSDGIEPLEDSEADLPESDASKNGISKESPVDEDIDAIDSDHNDGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKVILYDGRMDERKAIKEEFSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTDRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIQKDDKAKSFSSGVTGKRKRKDVIYADTLSEQQWMKAMENGGDMSTVLAKGKRREPRDYLSSDNIAQTSDDTGADESLYGSRTTIAPMANERTSEESFHNSPSSKRFKPERTKFQKQAYEDVGGSGLNQHVFSWNTHKKKRSSHQSQGSLSDSRGQNSNGRGNWN 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03213 1052 MobiDBLite consensus disorder prediction 303 354 - -
Vifa3g03213 1052 SMART helicmild6 685 769 IPR001650 -
Vifa3g03213 1052 Gene3D - 374 579 IPR038718 -
Vifa3g03213 1052 Pfam SNF2-related domain 555 636 IPR000330 GO:0005524|GO:0140658
Vifa3g03213 1052 Pfam SNF2-related domain 386 540 IPR000330 GO:0005524|GO:0140658
Vifa3g03213 1052 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 659 826 IPR001650 -
Vifa3g03213 1052 FunFam Probable ATP-dependent DNA helicase CHR12 576 875 - -
Vifa3g03213 1052 Coils Coil 860 880 - -
Vifa3g03213 1052 Pfam Helicase conserved C-terminal domain 656 769 IPR001650 -
Vifa3g03213 1052 MobiDBLite consensus disorder prediction 985 1004 - -
Vifa3g03213 1052 MobiDBLite consensus disorder prediction 1033 1052 - -
Vifa3g03213 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 823 IPR027417 -
Vifa3g03213 1052 SMART SnAC_2 862 922 IPR029295 GO:0042393
Vifa3g03213 1052 Gene3D - 580 800 IPR027417 -
Vifa3g03213 1052 PANTHER SNF2/RAD54 HELICASE FAMILY 544 977 - -
Vifa3g03213 1052 CDD SF2_C_SNF 647 780 - -
Vifa3g03213 1052 MobiDBLite consensus disorder prediction 948 984 - -
Vifa3g03213 1052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 395 540 IPR014001 -
Vifa3g03213 1052 Pfam Snf2-ATP coupling, chromatin remodelling complex 863 922 IPR029295 GO:0042393
Vifa3g03213 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 570 IPR027417 -
Vifa3g03213 1052 SMART ultradead3 379 574 IPR014001 -
Vifa3g03213 1052 MobiDBLite consensus disorder prediction 932 1052 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03213 Vifa-Chr3 923448233 923461474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03213 654 797 RAD5 or RAD16-like Gene Family AT5G22750 36.986 3.75e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g03213 SNF2_N 2.6e-32 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03213 - - gmx:100786280 1741.86