Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03212 ATGGCGATAGATGATGAAGAGAAGAACGAGAATGAACAACAAGACACCAAAACACTCATCTGCGCTCTCAACTTTCTCTCTCGCGACGTTCCTCTTCCCAATCACATCCTCAACTCCGTCTCTTCCATCTATCATCACAGCAATGATGTCAATGGTGACACAGGGAGTTCTGGAGATGATTTAATAACAGATCTTAAAGATGCAATATTGGAACAGCGCCCGAAATGTGCTTCACGTTTCAAATTGGAGGAAGCAATGGAAAACCGTCATCAAAGTCAGATTTGGCATCGGTTAAATGAGCTTGAAGAATTGCCTTCAAGTAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGATTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACAGGAAATTGTTTGATTGGGGCATGATGAGACTGTGCCGTCCGTTCTATGGAGTTGGAGATCCATTTGCCATGGACGCCGATGATCAATTAAGGAAGAAACGGGATTCTGAGAAACTGTCAAGATTAGAAGAGGCAGAGAAAAATCATATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATACTCAATGGTGTCCGCGAGCTCCAGTTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCTGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGTGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTGAATCTAGGAGCAGCCGTTCAACGTCAAAGGGACTTCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAATCGCCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGTGACTCAAGCGATTTACTTGAAGGTCAGCGACAATACAATTCAGCCATACATTCAATTCAGGAAAAGGTAACTGAACAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTGCAATGGATGATTTCTTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACTATTTCTCTCATAGCACATCTTTTGGAATACAAAGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCAACATGGGCTCCTAGCATTAAAGTTATTCTTTATGATGGACGAATGGATGAGAGAAAAGCAATAAAGGAGGAATTTTCAGGAGAGGGGAAATTTAATGTTATGATAACACATTATGATCTTATAATGAGAGACAAAGCATTTCTCAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCCGTTCTAGCAAAAACCTTGGACAATAGCTATAACATCCAACGGAGACTTTTGCTGACTGGTACCCCTATTCAGAACAGTTTGCAAGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCTAACATATTCAACTCGGTTCAAAATTTTGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTTTATCAGATGAAGAACAACTATTAATCATTCGGCGTCTGCATCAAGTTATAAGGCCCTTCATATTACGAAGGAAAAAGAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTTTATTATCAACAAGTTACTGATGTAGGCAGAGTTGGTTTGGACAATGGTTCTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGATTATGATATGTATAAATGTAAGGAGGAGATTGTCAGAGCATCGGGTAAATTTGAACTTCTTGACCGTTTGCTTCCAAAACTCCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTCGAAGTTTATTTAAGACTTCATGATTTCAAGTATCTTAGACTTGATGGGTCAACGAAAACTGAAGAAAGAGGTTCTCTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTATTAAGCACCCGGGCTGGCGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCTCATAGAATTGGACAAAAAAAAGAAGTTCGGGTTTTTGTGTTGGTAAGCGTGGGATCAATTGAAGAGGTAATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGACGAGGCTCAAGCTCACTTGGGGCAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTCGAGAAAATGGATGAAGAAAGAAGACAAAAGGAAAACTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGAGTGGGTGTATGCTCCAATTCAAAAGGATGACAAGGCCAAAAGTTTCAGCAGTGGTGTTACTGGAAAGCGAAAAAGAAAAGATGTGATATATGCTGATACATTGAGTGAACAACAATGGATGAAGGCTATGGAGAATGGGGGTGACATGTCAACAGTTTTAGCAAAAGGGAAAAGAAGAGAGCCAAGAGATTATCTCTCATCTGACAACATAGCACAAACCAGTGATGATACAGGGGCAGATGAAAGTTTATATGGGTCAAGGACTACAATTGCCCCTATGGCAAATGAGAGAACAAGTGAAGAGAGTTTCCATAACTCTCCTTCCTCAAAGAGATTCAAGCCTGAAAGAACAAAGTTTCAGAAACAGGCATACGAGGATGTCGGCGGGAGTGGTCTGAACCAGCATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCAAAGCCAGGGTTCATTATCCGATAGTAGAGGACAAAATTCAAATGGAAGAGGAAACTGGAATTGA 3273 0.4115 MAIDDEEKNENEQQDTKTLICALNFLSRDVPLPNHILNSVSSIYHHSNDVNGDTGSSGDDLITDLKDAILEQRPKCASRFKLEEAMENRHQSQIWHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQSKIRSDVSSEYWLNVECAYPDRKLFDWGMMRLCRPFYGVGDPFAMDADDQLRKKRDSEKLSRLEEAEKNHIETTKRRFFAEILNGVRELQLQIQASLKRRKQRNDGVLAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDFKHSDGIEPLEDSEADLPESDASKNGISKESPVDEDIDAIDSDHNDGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKVILYDGRMDERKAIKEEFSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIQKDDKAKSFSSGVTGKRKRKDVIYADTLSEQQWMKAMENGGDMSTVLAKGKRREPRDYLSSDNIAQTSDDTGADESLYGSRTTIAPMANERTSEESFHNSPSSKRFKPERTKFQKQAYEDVGGSGLNQHVFSWNTHKKKRSSHQSQGSLSDSRGQNSNGRGNWN 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03212 1090 MobiDBLite consensus disorder prediction 303 354 - -
Vifa3g03212 1090 MobiDBLite consensus disorder prediction 1071 1090 - -
Vifa3g03212 1090 Coils Coil 898 918 - -
Vifa3g03212 1090 CDD SF2_C_SNF 685 818 - -
Vifa3g03212 1090 Gene3D - 618 838 IPR027417 -
Vifa3g03212 1090 Pfam SNF2-related domain 386 674 IPR000330 GO:0005524|GO:0140658
Vifa3g03212 1090 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 395 561 IPR014001 -
Vifa3g03212 1090 MobiDBLite consensus disorder prediction 986 1022 - -
Vifa3g03212 1090 Pfam Helicase conserved C-terminal domain 694 807 IPR001650 -
Vifa3g03212 1090 SMART helicmild6 723 807 IPR001650 -
Vifa3g03212 1090 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 864 IPR001650 -
Vifa3g03212 1090 FunFam Probable ATP-dependent DNA helicase CHR12 614 913 - -
Vifa3g03212 1090 MobiDBLite consensus disorder prediction 970 1090 - -
Vifa3g03212 1090 FunFam Chromatin structure-remodeling complex protein SYD 374 617 - -
Vifa3g03212 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 608 IPR027417 -
Vifa3g03212 1090 Gene3D - 374 617 IPR038718 -
Vifa3g03212 1090 PANTHER SNF2/RAD54 HELICASE FAMILY 175 1015 - -
Vifa3g03212 1090 SMART ultradead3 379 572 IPR014001 -
Vifa3g03212 1090 SMART SnAC_2 900 960 IPR029295 GO:0042393
Vifa3g03212 1090 MobiDBLite consensus disorder prediction 1023 1042 - -
Vifa3g03212 1090 Pfam Snf2-ATP coupling, chromatin remodelling complex 901 960 IPR029295 GO:0042393
Vifa3g03212 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 861 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03212 Vifa-Chr3 923448233 923461474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03212 690 835 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.27e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g03212 SNF2_N 1.3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03212 - - gmx:100786280 1840.47