Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03206 ATGCAAGACTTCTTCGGCTCCATTCGCCGATCCATAGTCTTCTCATCTCCACCCGCACACGCCGACGATGGACGCTTCACCGGATTCGCCAACAAGATCGGCTCCGCCATTCGTAAATCCAGAATCGGCCTCAAGTCTCCTTCTCCACCTCCTCCGCCGATTAGGTGGCGGAAGGGTGAGTTGATTGGTTCCGGTGCTTTTGGTCGAGTTTATATGGGTATGAACCTCGACTCCGGGGAGCTTATTGCCGTTAAACAGGTTTTGATCGAGCCTGGTATTGCTTTCAAGGCGAATACACAGGCTAATATTCGGGAGCTTGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAGCATCCGAATATTGTTAGATACTTGGGAACTGCTAGAGAGGAAGATTCCTTGAATATTCTGCTGGAGTTTGTACCTGGTGGATCTATCTCATCGCTGTTGGGGAAATTCGGATCCTTTCCGGAGTCCGTTATAAAAACGTATACAAAACAGCTTTTAGAGGGGCTTGAATACCTTCACAATAACAGAATTATTCACCGGGATATTAAGGGTGCAAACATTCTAGTTGATAACAAAGGGTGTATTAAACTCGCAGACTTTGGCGCATCCAGGAAAGTCGTGGAATTGGCTACTATAAATGGAGCAAAGTCTATGAAGGGTACCCCACACTGGATGTCACCTGAAGTTATTTTACAGACAGGATATACAACTTCTGCTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCATGGAGTCAACAGTATCCCCAAGAGGTTTCAGCTCTTTTCTACATTGGGACAACTAGATCGCATCCACCAATACCCGAACATCTGTCTGCTGAGGCAAAGGACTTTTTGCTGAAATGCTTTCACAAGGAACCAGATTTAAGACCTTCTGCATCCGACTTGTTACTGCATCCATTCATCACCTGCGAGTATCAGGAATCTCATTCAATATCACGCAGTTCAGTCAGGGACTCTTGCAGTCGGATGACAACAAATGGGATGAACTCTAGGAACTTTTTGGATTCTATCCAAGGATCAACATGTACAGGTCTAAAAGATGTTTTTCAGATGGATAGTTTAAGGTTCTCAAATGCAAATCTTCTAAAACCAGGTTCCTACCAGGGAGCAGACAACTATGATGATGACATGTGTCAGATGGATGATGATGATATTTTGGTTGCATCACCAGTAAAAGCTAACTCCCTACTTGCTGCTGACGACATAAAGAGTTTCAATCCAATGTGCGAACCTGTGGAGGATGGCTGGCCTTGCAAATCTGACGAAACACTAAATTTAAAGAAAAGCAGACTGAACGTGTCCCCAGATCAAACTATTAGGAAAACTACGAGTCCCAAATCATCTCCTAATGAAGAGAAGGAGTTTTCATTTTCAAGTGAACCTCTTGGAGTAGAAGATGAGGATGAAGTAACAGAATGCAAAATTAGAGCTTTCCTGGATGATAAGGCCTTTGAACTGAATAAGCTCCAAACACCTCTTTATGAAGAATTCTTTGGCAAATCAATTGCAGCCATTCCTCGTGTACCTGTTGCAGTTGCAAAGAGTAAAGTTATTTCAGATGTCTCAAATGTAACATCAAAAAGCAGGCCTCCTAGTCAAGATAGACGGCGATTCTCAATGGCCAGCATTGCCAATGTAACAAGCCCTGAGAGTCATAGAAAATATCTTACGAAACCTGTGACTGCTCGTAGTAAACCTTTGCAGGAAATTCAGCCTTCTGAGCTTTACGAGTCAAAGGAGACCCTTCATGATGCTGAGCTGGGATCAAGTGTCAGCCCAAGCTTTTCTGAGAGACAAAGGAAATGGAAAGAAGAACTTGCAGAAGAGCTTGAGCGGACACGAGAGGTTATGCGTCAAACAGGTGGAGGGAAGATAACATCCCCAAAGGATCGCAGTTTTCTCAGAGACTGA 1965 0.4397 MQDFFGSIRRSIVFSSPPAHADDGRFTGFANKIGSAIRKSRIGLKSPSPPPPPIRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIEPGIAFKANTQANIRELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLEGLEYLHNNRIIHRDIKGANILVDNKGCIKLADFGASRKVVELATINGAKSMKGTPHWMSPEVILQTGYTTSADIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTRSHPPIPEHLSAEAKDFLLKCFHKEPDLRPSASDLLLHPFITCEYQESHSISRSSVRDSCSRMTTNGMNSRNFLDSIQGSTCTGLKDVFQMDSLRFSNANLLKPGSYQGADNYDDDMCQMDDDDILVASPVKANSLLAADDIKSFNPMCEPVEDGWPCKSDETLNLKKSRLNVSPDQTIRKTTSPKSSPNEEKEFSFSSEPLGVEDEDEVTECKIRAFLDDKAFELNKLQTPLYEEFFGKSIAAIPRVPVAVAKSKVISDVSNVTSKSRPPSQDRRRFSMASIANVTSPESHRKYLTKPVTARSKPLQEIQPSELYESKETLHDAELGSSVSPSFSERQRKWKEELAEELERTREVMRQTGGGKITSPKDRSFLRD 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03206 654 FunFam Mitogen-activated protein kinase kinase kinase 2 55 347 - -
Vifa3g03206 654 FunFam Serine/threonine-protein kinase STE11 53 146 - -
Vifa3g03206 654 Coils Coil 96 116 - -
Vifa3g03206 654 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Vifa3g03206 654 MobiDBLite consensus disorder prediction 578 619 - -
Vifa3g03206 654 MobiDBLite consensus disorder prediction 448 473 - -
Vifa3g03206 654 MobiDBLite consensus disorder prediction 631 654 - -
Vifa3g03206 654 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 49 332 - -
Vifa3g03206 654 SUPERFAMILY Protein kinase-like (PK-like) 55 341 IPR011009 -
Vifa3g03206 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Vifa3g03206 654 MobiDBLite consensus disorder prediction 448 482 - -
Vifa3g03206 654 Gene3D Transferase(Phosphotransferase) domain 1 55 353 - -
Vifa3g03206 654 Pfam Protein kinase domain 57 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03206 654 CDD STKc_MAPKKK 55 319 - -
Vifa3g03206 654 ProSiteProfiles Protein kinase domain profile. 56 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03206 654 SMART serkin_6 56 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03206 Vifa-Chr3 920747607 920754349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03206 1 644 MAP Kinase Kinase Kinase AT3G06030 54.669 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa3g03206 Pkinase 2.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03206 - K20606 gmx:100795863 878.241