Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03194 ATGTTTGATCTTCAACTCGAACACTCTGATAAATTTGATCTTCAACTACAACAACAAGAAGTGCAACATCAAAATGGAATTGATTCTCCTCAGCCAATACAACAACAACAACAACAATTTCTAGACTTTTCAACCAACAACACTTCATCGTCAAGTGATTGGGGAGGGAATAGTCAAAATCCAAATTTTAGAAACAACATTGTTTCTTCTAATGGAGAACAAGATCTCAACCAAGAACAAAAAAACATGAGCGTTGTTCGGCATTCACGTGACCAAATAAGAGAAATGGAAAAGGTTTTCAAGCATTGCCCTCACCCCAATCAAGAGGAAAGGGAAAAGATGAGCCGCGTGCTAGGTATTGCGCCTATCCAAATCAAGTTTTGGTTCCAAAACAAGAGAAATCAAGATAAGATAATGCAAGAACATCGCCAAAACAATCTTTTGAGACAAGAGAATGCAAGGCTTCGTATCGAGAATGAGATGCGTAATGAGAAATTAAAAAACACTATATGTCTACACTGTAAAGGGCCAGTTTCTATTGGTAAAACGTGCTTTAACCAAAACAAAATTAGAATTGAGAATGCTAGATTAAAGGCTGAGATTGAAAAGTTGTCGGGAGTTTCGAGAAATCATATAAATGCAGTGGAAAGTGATTATGATATCACTTCAAGTATGATTGGGGAGTTATACTATGATGGTAATGATCCATTTGGTTCACTTTTAACTCCTTATTTTGACAAACAGAAAATTGTAGAACTTGCTATGGTTTCTATGGAGGAACTCACAAGATTAACTCTAGCTGGAGCTCCTTTATGGATCTCTACTAATGAGTCTGAGATTTTAAATGAATCTGAATACATTAGGGTTTTCCCTAATGTAATATCTCCAAAACACACAGGGTTTATATCTGAGTCTTCAAGAGAATCAATGATTATTTTTATGAATCATGTTAATCTCATTAAGACTCTTATGAATGTGAATCAATGGTCTGCGATGTTTTCTGACATTGTTTCCAAAGCAGTGACAATTGAAGTTCTATCACATGGAGGATTTGAAAACTACAATGGACTAGTACAAGTGATGTCAGCTGATTTTCAAGTTCCTTCACCACTTGTCCGTGCTCGTGAAAACTATTTTGTTAGATATTGTAAGAAACACCAAGAAGGAATATGGGCAGTGGTTGATGTTTCCTTGGATCATCTTCGACCAAGTAGTACCACAATGCCAAGAAGTCAAAGACGACCCTCCGGTTGTTTAATTCAAGAATTACCTTATGGTTATTCTAAGGTTACATGGGTTGAGCACGTGGAAGTGGATCATACTACATTATTGTCAAATAGATTTTACAACTCTTTAATAACTTCAAGTCTTGCCTTTGGAGCTAAGCGATGGGTGGCATCACTAGGTAGACAATGTGAACGTCTCACTTGTTCAATAGACACCAACGTACCTACACGAGACTACTATGATAGTTTTCAAGGAAGGAAGATCTTACTGAATTTGGCACAGAGAATGAAATTGTGCTTTTCATCTATTGTTGGTTCTTCCATAGCAAGTTGTTGGAATGTTCTAACACCTGATTCTCATGATGTAAGAGTCATGTCCAAAACAAACACTGAACCTGGAACACCTTCTGGCGTAATTCTTAATGGTGGAACTTCTCTCTGGCTTCCAGTTCTTCCCAAGAGACTTTTTGATTTTCTTGGAAACCAAAATTCGAGAAGCGAGTGGAATATTCTTTCAATTGGGAGTATAATTAAAGAAATGACACACATTAGACATGGTCGCGATCTTGGAAACTATGTTTCTTTATTCCAAGTCAATAATAAAAACTACATGCAAAACAATAACATGCTTCTACTTCAAGACAAAAGCATTGATAGAACTTCCTCACATGTAATCTTTGCACCTGTTGACATCAACTCAATGAATTTAGTATTCAATGGTGGAGATCCAAATATTATTGCTTTGTTTCCTTCTGGTTTTGTCATTCTTCCAGATGGGGTCCAACTCAGCAATGGAGGACCAATGCTAAATTCTATTGGATCTGGAGGTTGCCTGTTGACAATTTCATTTCAGATTTTGGTTGGTTTAAATCCAGCATTAAGAATAGAAAATGGTTGGGTAGAAGCTGTTGTGAATTTTATTAAGAACACATGTGAAAGAATCAAGGTCGCAATGGCATGA 2187 0.3663 MFDLQLEHSDKFDLQLQQQEVQHQNGIDSPQPIQQQQQQFLDFSTNNTSSSSDWGGNSQNPNFRNNIVSSNGEQDLNQEQKNMSVVRHSRDQIREMEKVFKHCPHPNQEEREKMSRVLGIAPIQIKFWFQNKRNQDKIMQEHRQNNLLRQENARLRIENEMRNEKLKNTICLHCKGPVSIGKTCFNQNKIRIENARLKAEIEKLSGVSRNHINAVESDYDITSSMIGELYYDGNDPFGSLLTPYFDKQKIVELAMVSMEELTRLTLAGAPLWISTNESEILNESEYIRVFPNVISPKHTGFISESSRESMIIFMNHVNLIKTLMNVNQWSAMFSDIVSKAVTIEVLSHGGFENYNGLVQVMSADFQVPSPLVRARENYFVRYCKKHQEGIWAVVDVSLDHLRPSSTTMPRSQRRPSGCLIQELPYGYSKVTWVEHVEVDHTTLLSNRFYNSLITSSLAFGAKRWVASLGRQCERLTCSIDTNVPTRDYYDSFQGRKILLNLAQRMKLCFSSIVGSSIASCWNVLTPDSHDVRVMSKTNTEPGTPSGVILNGGTSLWLPVLPKRLFDFLGNQNSRSEWNILSIGSIIKEMTHIRHGRDLGNYVSLFQVNNKNYMQNNNMLLLQDKSIDRTSSHVIFAPVDINSMNLVFNGGDPNIIALFPSGFVILPDGVQLSNGGPMLNSIGSGGCLLTISFQILVGLNPALRIENGWVEAVVNFIKNTCERIKVAMA 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03194 728 SMART START_1 252 474 IPR002913 GO:0008289
Vifa3g03194 728 CDD START_ArGLABRA2_like 247 473 - -
Vifa3g03194 728 SUPERFAMILY Bet v1-like 246 475 - -
Vifa3g03194 728 Pfam START domain 257 474 IPR002913 GO:0008289
Vifa3g03194 728 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Vifa3g03194 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 82 727 IPR042160 -
Vifa3g03194 728 Gene3D - 301 469 IPR023393 -
Vifa3g03194 728 CDD homeodomain 87 140 IPR001356 GO:0003677
Vifa3g03194 728 SUPERFAMILY Bet v1-like 520 724 - -
Vifa3g03194 728 Coils Coil 138 167 - -
Vifa3g03194 728 SUPERFAMILY Homeodomain-like 84 148 IPR009057 -
Vifa3g03194 728 MobiDBLite consensus disorder prediction 44 70 - -
Vifa3g03194 728 Gene3D - 68 156 - -
Vifa3g03194 728 ProSiteProfiles START domain profile. 243 477 IPR002913 GO:0008289
Vifa3g03194 728 Pfam Homeodomain 87 137 IPR001356 GO:0003677
Vifa3g03194 728 SMART HOX_1 81 143 IPR001356 GO:0003677
Vifa3g03194 728 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03194 Vifa-Chr3 919841074 919844704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03194 87 728 Homeobox Transcription Factor Family AT4G04890 50.148 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa3g03194 START 7.3e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03194 K09338 - gmx:100782240 664.84