LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g03190	ATGGCGCAACCGTCATCATCACTTTCACCCCTCAGTCTCGACGCCGTAGACGATGTTTACTTCTCCGTGGTCTCCGATGATGAAACCGACCCTGCCCCCGTCTCCGATCACAAGTACGCTGAAGCATTACAGTTTCAAGAAGCGCTGATGTCCTCTGTCATCACTTCGTCACAACCACCACTGTCATTGCCGTGCGTAGCATCTTCGTCAAGAACCGTCGATGAAGAGTCACTGTTCAATGAAACCCTTAAGGACTCACTCATCACTTCCCAATATGTTTCATCATCAACATCACCGCCACTACTCCGAGTAGCATCATCATCATCAAAGGCGGTTGAAGTCGACACTCTCGTCACCAAAGAAGATGAACGGACTTTTCCGATCATCATTTGCGAGATTTGCGCTGAACCAAAAACGGACGAGGATATGTTCAGAAACAAAAGATGTTACCATTCCTTTTGTTCCGACTGTGTTGTCAAACAAGTAGCAACAAAAATCCAAGAAAACATAACGGTTGTTTCTTGTCCCGGTTTGAACTGCAAGGGTGTGTTGGAGCTTGAAACCCTTAGGCCATTGCTTCCAAAAGAATTGATTGATAGATGGGATGATGCAATGACTGAGGCTCTTTTGCTTACGGTTCCGAAATTCTATTGTCCGTTTAAGGATTGTTCGGCGATGTTGCTTGATGAGGATGAAGAGGGGGGAGAGATTAGGGAATCTGAATGTCCTTTTTGTCATAGGTTGTTTTGTGCTAGGTGTCATGTTTCTTGGCATCCTGGGGTTAGTTGTGAGGAGTTTCAGACATTGAATGTGGATGAAAGGGGGAGGGAAGATCTTCTTGTTAGAGAGCTTGCGAATCAGAAGAAATGGAAGAGGTGTTCTAAGTGTAGGTTCTATGTTGAAAAAAAGGAGGGATGTTTGCATATCACATGCAGGTGCAAATATGAGTTTTGCTATGCTTGCGGAGAACAGTGGACAACTACTCATGGTGAGTGCCGAAGAAATTAG	1008	0.4504	MAQPSSSLSPLSLDAVDDVYFSVVSDDETDPAPVSDHKYAEALQFQEALMSSVITSSQPPLSLPCVASSSRTVDEESLFNETLKDSLITSQYVSSSTSPPLLRVASSSSKAVEVDTLVTKEDERTFPIIICEICAEPKTDEDMFRNKRCYHSFCSDCVVKQVATKIQENITVVSCPGLNCKGVLELETLRPLLPKELIDRWDDAMTEALLLTVPKFYCPFKDCSAMLLDEDEEGGEIRESECPFCHRLFCARCHVSWHPGVSCEEFQTLNVDERGREDLLVRELANQKKWKRCSKCRFYVEKKEGCLHITCRCKYEFCYACGEQWTTTHGECRRN	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g03190	335	Pfam	Zinc finger, C3HC4 type (RING finger)	131	170	IPR018957	GO:0046872
	Vifa3g03190	335	CDD	Rcat_RBR_unk	289	325	-	-
	Vifa3g03190	335	SMART	ibrneu5	199	263	IPR002867	GO:0008270
	Vifa3g03190	335	SMART	ibrneu5	273	332	IPR002867	GO:0008270
	Vifa3g03190	335	ProSitePatterns	Zinc finger RING-type signature.	149	158	IPR017907	-
	Vifa3g03190	335	Gene3D	-	259	335	-	-
	Vifa3g03190	335	FunFam	RBR-type E3 ubiquitin transferase	128	212	-	-
	Vifa3g03190	335	CDD	BRcat_RBR_unk	214	266	-	-
	Vifa3g03190	335	SUPERFAMILY	RING/U-box	274	332	-	-
	Vifa3g03190	335	FunFam	RBR-type E3 ubiquitin transferase	265	335	-	-
	Vifa3g03190	335	ProSiteProfiles	Zinc finger RING-type profile.	131	176	IPR001841	-
	Vifa3g03190	335	SUPERFAMILY	RING/U-box	128	208	-	-
	Vifa3g03190	335	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	48	332	IPR031127	GO:0004842\|GO:0016567
	Vifa3g03190	335	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	128	209	IPR013083	-
	Vifa3g03190	335	Pfam	IBR domain, a half RING-finger domain	282	332	IPR002867	GO:0008270
	Vifa3g03190	335	Pfam	IBR domain, a half RING-finger domain	202	263	IPR002867	GO:0008270
	Vifa3g03190	335	SUPERFAMILY	RING/U-box	203	268	-	-
	Vifa3g03190	335	ProSiteProfiles	TRIAD supradomain profile.	127	335	IPR044066	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g03190	Vifa-Chr3	918473342	918474435	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g03190	131	322	C3H Transcription Factor Family	AT2G19610	29.851	1.55e-20	90.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g03190	K11975		-	cave:132186566	335.495