Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03180 ATGAGCAGTTCAAGAAGTGATCCCTTGTTTGCTCATGCAATGGCGTTTGTAACGAAAGCAAAATCTAGGGTTACCGCAGAAAAGTATAATCAGTTTTTACGACTCCTATATAATTACCACCATGCTAGAAGAATTGATATAGGAGTTTTCAAACAAGGAGTTTTTGAGTTGTTTAGAGAGCATAAAGATTTAATTTCAAGATTCAACATGTTTTTGCCTCAGGGACACAAATTTGAACAACTAGGTGATGGCGATGCATTAGCAGTCAAAGAAGATCAGAAAGATGATGAAGGAAAACAAGTTTGA 306 0.3595 MSSSRSDPLFAHAMAFVTKAKSRVTAEKYNQFLRLLYNYHHARRIDIGVFKQGVFELFREHKDLISRFNMFLPQGHKFEQLGDGDALAVKEDQKDDEGKQV 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03180 101 Pfam Paired amphipathic helix repeat 27 72 IPR003822 GO:0006355
Vifa3g03180 101 SUPERFAMILY PAH2 domain 6 74 IPR036600 GO:0006355
Vifa3g03180 101 PANTHER SIN3B-RELATED 13 83 IPR039774 GO:0003714
Vifa3g03180 101 Gene3D Paired amphipathic helix 7 75 IPR036600 GO:0006355
Vifa3g03180 101 ProSiteProfiles PAH domain profile. 5 75 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03180 Vifa-Chr3 915770804 915771109 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g03180 PAH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03180 - K11644 psat:127093807 132.109