Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03179 ATGAGCAGTTCGAGAACAGATCAGACGTTTGATGATGTATTGGCGTATGTAAAGACAGTGAGATATGTGTTTGAAGATAAGATTGAAAAGTTTGACGAATTTGTGAGACTCATACGTGATTATGAGGCCAGAAGAATTAATATAGAAGCTGTGAAAGAAGGAGCGATAGAGTTGTTTAAAGAGCACAAAGATTTACTTTCAAGATTCAATATCTTCTTGCCAGGAAACGAAATCCCAATTCCATTGGATGATGAACAACAAGTTGCTGTTGATGCATTAGCTGTCAAAGATGAACAACAAGGTGGTGACGATGCATTAGCAGACAAGGATGAAAAGAAAGATGATGAAAATCAAGGTGATGGCGATGCATTAGTAGCAGTCAAAGATTATCAGAAAAATGATGAACAACAAGGTAATGACGATGAATTAGCAGTTAAAACTGATGAACATCAAGGTGATGGCGATGCATTAGCAGTCAGTGATGATGATGAATTTGCGGCCAAAGATGAACAAAAGGATGATGAACAACAAGGTGATGGCGATGCATTATTAGCAGTCAGTGATGAACAACAGAAAGATGATGAACAACAAGGTGATGATGATGCATTAACAGACATAGACTATGAACAACAAATTGATGATGCATTAGCAGCCTTAGATGATGAACAAGAAAGTGATGACGATGCATTTGCGGCCAAAGATGAACAAAAGGACGATGAACAACAAGGTGATCACGATGCATTATTAGCAACCAATGATGAACAGAAAGATGAACAACAGGGTGATGATGATGCATCAATGGTCGAAGATGAACAACAAGGCGATGATGATGCATTCGAAGTCAAAGAAGACGAACATCAAGGTGATGGCGATGCATTTGCGGCCAAAGATGATGATGAACTTCAAGGTGATGACGAGGCATTAGCAGTCAAAGATGATCAGAAAAAGGATGAACATCAAGGTGATGATGATCCATTAGCTGCCAAAGATGAACATAAAGATGATGAATAA 1011 0.3858 MSSSRTDQTFDDVLAYVKTVRYVFEDKIEKFDEFVRLIRDYEARRINIEAVKEGAIELFKEHKDLLSRFNIFLPGNEIPIPLDDEQQVAVDALAVKDEQQGGDDALADKDEKKDDENQGDGDALVAVKDYQKNDEQQGNDDELAVKTDEHQGDGDALAVSDDDEFAAKDEQKDDEQQGDGDALLAVSDEQQKDDEQQGDDDALTDIDYEQQIDDALAALDDEQESDDDAFAAKDEQKDDEQQGDHDALLATNDEQKDEQQGDDDASMVEDEQQGDDDAFEVKEDEHQGDGDAFAAKDDDELQGDDEALAVKDDQKKDEHQGDDDPLAAKDEHKDDE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03179 336 MobiDBLite consensus disorder prediction 230 256 - -
Vifa3g03179 336 Pfam Paired amphipathic helix repeat 29 73 IPR003822 GO:0006355
Vifa3g03179 336 MobiDBLite consensus disorder prediction 193 229 - -
Vifa3g03179 336 MobiDBLite consensus disorder prediction 257 278 - -
Vifa3g03179 336 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
Vifa3g03179 336 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Vifa3g03179 336 SUPERFAMILY PAH2 domain 5 74 IPR036600 GO:0006355
Vifa3g03179 336 MobiDBLite consensus disorder prediction 149 336 - -
Vifa3g03179 336 MobiDBLite consensus disorder prediction 279 297 - -
Vifa3g03179 336 MobiDBLite consensus disorder prediction 149 179 - -
Vifa3g03179 336 MobiDBLite consensus disorder prediction 99 122 - -
Vifa3g03179 336 PANTHER SIN3B-RELATED 8 113 IPR039774 GO:0003714
Vifa3g03179 336 MobiDBLite consensus disorder prediction 307 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03179 Vifa-Chr3 915377541 915378551 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g03179 PAH 2.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03179 - K11644 psat:127096214 316.62