Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03177 ATGAGCAGCTCAAGAATTGTTCCAGAGCATGAAGATGCAGAAGCATTTATGGCGGCAGTGAAACTTGTGTTGAAAGATAAGAGAGGAAAGTATGAAGAATTCTCAAAACTCATAATTGGTTACATGGCCAGAAGAGTTGATATCGGAGCTGTCAAAGAATTAGCCATAAAGTTGTTTAAAGAGCATAGAGATTTGATTTCAAGATTCAACAATTTCTTGCCACCGGGTCATGAAATCTCACTTGCATTGGATGATGAACAACAAGTTGCTGATGATGAAGGGTTAATAGTCAAAGATGAACAGAAAGATGATGAACAACAGGGTGATGGCGATACATTAGCAGTCAAAGATGATGAACAACAAGGTCATACATTAGCAATCCCTTAA 387 0.3798 MSSSRIVPEHEDAEAFMAAVKLVLKDKRGKYEEFSKLIIGYMARRVDIGAVKELAIKLFKEHRDLISRFNNFLPPGHEISLALDDEQQVADDEGLIVKDEQKDDEQQGDGDTLAVKDDEQQGHTLAIP 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03177 128 ProSiteProfiles PAH domain profile. 7 76 IPR003822 GO:0006355
Vifa3g03177 128 Pfam Paired amphipathic helix repeat 30 73 IPR003822 GO:0006355
Vifa3g03177 128 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Vifa3g03177 128 PANTHER SIN3B-RELATED 11 92 IPR039774 GO:0003714
Vifa3g03177 128 MobiDBLite consensus disorder prediction 98 118 - -
Vifa3g03177 128 SUPERFAMILY PAH2 domain 9 76 IPR036600 GO:0006355
Vifa3g03177 128 MobiDBLite consensus disorder prediction 98 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03177 Vifa-Chr3 915288855 915289241 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g03177 PAH 6.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03177 - - psat:127096214 126.716