Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03175 ATGATTCATAGAAAACAAATGCAGCACTTCAAAAGCTCTGCCACTGTCTATGTTTTTCTTTTCTTTGCTCTAATTATTGCTACAACAACAACTCAAGCAGCTACAGATATAACTTTCATTCAGAGTTACTGTCCAAATACAACCACTTTTTCTCCAAACACAACCTACCAAACAAATCTCAACAAGCTTCTTTCTCTGCTTTCTTCAAACTCCACCAACAAAAATGGCTTCTACTACACCACCGTCGGCCAAAACAACCCCGGAAACACCGTATACGGTGCCTTCCTCTGCCGTGGAGATCTCGCAACAAAAGAATGCCAAGACTGTGTTTCCGCAGCATCCAATCAAATCCTTCAAAACTGTCCTACTGGAAAAGAATCAATTATTTGGTTAGCTGAGTGCATGATACGATACTCAAACCTTTCTTTCTTTAACGTGGCTGCAGAAGTTCCTATGCGTGCTCTCCTGAACACTGCAAGTGTGACGGAGCAAAGCCGGTTCATGCAACTATTATTGGATACAATGAACGCTGCAACGGCAGAGGCAGTAAACGGTGGAGATGACAAAAAGTTTGGAACTAAAAAAGCAAATTTTACTATTTTTCAGAATTTGTATACACTTGCACAGTGTACACCGGATTTGTCAAAGTCAGGATGTGAACAATGCCTTACAACAGCAGCCAATGAGTTACCATCTTGCTGTAATGGAAAACGAGGTGGAAGAGTGCTTCTTCCTAGTTGTAATATTAGGTACGAGCTTAATCCATTTTATCATGAGTTAAATGTTCCTGCTCCTGAAGAATCGAGGCCAAATCCGCCAAATCCACAAGCAAAAAAATCCCGGAACTCGACAGTGATCATTGTTGCGATTGTATCTCCGATTGTGATTATCTTATTGCTTACACTGATAGTCTTATGGATCATATCTGAAAAGAAAATAAGAAAATTCAATCCAGTGCCTGTGCCTGAAGAAAGCGTTGAAATCTCCAGAGTAGAATTCTTGCAATTTGATTTTGATACTATTGTAGCAGCCACAAACAACTTCAGTGAAAACAACAAATTGGGGGAAGGAGGATTCGGCGAGGTTTACAAGGGTATGTTATTTAATGGACAAGAGATTGCTGTGAAGAGGCTATCGAGAAGTTCTGGTCAAGGCATAGGCGAATTCAAGAACGAGGTAGTTTTGGTAGCAAAACTACAACACCGAAATCTTGTTAGGATTCTTGGTTTTTGCTTGGACGGGGAAGAAAAGATGCTTGTTTATGAATTCATGCCCAACAAAAGTCTAGACTATTTTCTATTTGATCGTGAAAAGGCGCATCAGATGAATTGGCGAAGACGATACAAGATAATAGAGGGAATTGCGCGAGGAATACTTTATCTTCATGAAGATTCTCGACTTAGAATCATACACCGTGATCTTAAAGCTAGTAATATATTATTAGATGAGAATATGGATCCTAAAATTGCTGATTTTGGGATGGCAAGAATTTTCGGTGTGGATCAAACTCGAGGAATCACAAATAGAGTTGTTGGAACATTCGGTTACATGTCTCCAGAGTACGCAATGCACGGAGAGTTTTCTATCAAAACAGACGTGTATAGCTTTGGAGTCCTTGTTCTCGAGATAATTACGGGAAAGAAGATCACGTCCTTCCGCGAATCAGGCTATGCTGAGGACCTCTTGAGCTATGTTTGGAAAAAATGGAATGATGGGACACCGACGGAGTTACTTGACACGACATTGAGAGATTCATACTCAACAGTTGAAGTAACAAGATGCGTCCATGTTGGGTTAAGTTGTGTTCAAGAAGATCCAGAACAAAGACCATCCATGCAGACAATAGTTTTATTGCTAAGTAGCAATTCTGTTACTCTTGAACAACCTCGACGACCAGCTGGTTATATTAGTAGCAAATCTGATCAAAGCTTTTTAAGAAATGACTTTGAGAGTTCAAAAAAGTCTACAACTACAAGCAAATCAGCTACGGTTTCTGTTGATGAATCATCCATTACTCAGGTGTACCCTCGATAG 2034 0.4002 MIHRKQMQHFKSSATVYVFLFFALIIATTTTQAATDITFIQSYCPNTTTFSPNTTYQTNLNKLLSLLSSNSTNKNGFYYTTVGQNNPGNTVYGAFLCRGDLATKECQDCVSAASNQILQNCPTGKESIIWLAECMIRYSNLSFFNVAAEVPMRALLNTASVTEQSRFMQLLLDTMNAATAEAVNGGDDKKFGTKKANFTIFQNLYTLAQCTPDLSKSGCEQCLTTAANELPSCCNGKRGGRVLLPSCNIRYELNPFYHELNVPAPEESRPNPPNPQAKKSRNSTVIIVAIVSPIVIILLLTLIVLWIISEKKIRKFNPVPVPEESVEISRVEFLQFDFDTIVAATNNFSENNKLGEGGFGEVYKGMLFNGQEIAVKRLSRSSGQGIGEFKNEVVLVAKLQHRNLVRILGFCLDGEEKMLVYEFMPNKSLDYFLFDREKAHQMNWRRRYKIIEGIARGILYLHEDSRLRIIHRDLKASNILLDENMDPKIADFGMARIFGVDQTRGITNRVVGTFGYMSPEYAMHGEFSIKTDVYSFGVLVLEIITGKKITSFRESGYAEDLLSYVWKKWNDGTPTELLDTTLRDSYSTVEVTRCVHVGLSCVQEDPEQRPSMQTIVLLLSSNSVTLEQPRRPAGYISSKSDQSFLRNDFESSKKSTTTSKSATVSVDESSITQVYPR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03175 677 Pfam Protein tyrosine and serine/threonine kinase 351 617 IPR001245 GO:0004672|GO:0006468
Vifa3g03175 677 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 37 143 - -
Vifa3g03175 677 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Vifa3g03175 677 ProSiteProfiles Protein kinase domain profile. 348 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03175 677 MobiDBLite consensus disorder prediction 649 677 - -
Vifa3g03175 677 SUPERFAMILY Protein kinase-like (PK-like) 333 637 IPR011009 -
Vifa3g03175 677 SMART serkin_6 348 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03175 677 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Vifa3g03175 677 Gene3D - 150 256 IPR038408 -
Vifa3g03175 677 Gene3D - 35 143 IPR038408 -
Vifa3g03175 677 CDD STKc_IRAK 354 616 - -
Vifa3g03175 677 ProSiteProfiles Gnk2-homologous domain profile. 38 143 IPR002902 -
Vifa3g03175 677 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 673 - -
Vifa3g03175 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vifa3g03175 677 Gene3D Phosphorylase Kinase; domain 1 314 423 - -
Vifa3g03175 677 FunFam Cysteine-rich receptor-like protein kinase 25 151 256 - -
Vifa3g03175 677 Gene3D Transferase(Phosphotransferase) domain 1 424 631 - -
Vifa3g03175 677 FunFam Cysteine-rich receptor-like protein kinase 10 311 423 - -
Vifa3g03175 677 Pfam Salt stress response/antifungal 44 140 IPR002902 -
Vifa3g03175 677 Pfam Salt stress response/antifungal 162 252 IPR002902 -
Vifa3g03175 677 FunFam cysteine-rich receptor-like protein kinase 10 424 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03175 Vifa-Chr3 915245924 915248656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03175 10 677 Receptor kinase-like Gene Family AT4G05200 51.890 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa3g03175 PK_Tyr_Ser-Thr 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03175 - - cit:127900229 728.398