Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03174 ATGGAGTTTCAGCGACGCCAAGGTCACTGCCTCTCCGAGAGGAAGGGGCAAAAGCGGAAGCTAGACGAAGAATCGCAGGATGAGCCACAGATCTCGGCGGCGCCGCCCACCGCCGACGAGCGCGCGACAGTTCTTTCTGAAGTGGAGTATCAGGTCAACATCCTCGAGTCGACTTTCACGTGGAAGGACACCGACCGAGCAGCGGCGAAGCGAGCCACTCATGCCCTCGCTGATCTCGCGAAGAATGAGGGAGTGGTAAATGTTATTGTGGAAGGAGGTGCTATTCCGGCTTTGGTTAAGCATCTTCAGGCGCCGCCTGTGGAGGATTGCGATCAGAAGGCGTTGCCGTTTGAGCATGAAGTTGAGAAAGGAAGTGCTTTCGCTCTAGGACTTCTTGCTGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAGTGGTGCCTTAACTCACCTTGTTGATCTTTTGAAGAGGCATAACAATGGCTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTGTTACTAATCTTGCACATGAGAATAGCAACATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTATTCATTTGCTCGAGTCTGCCGATACAAAGGTGCAAAGAGCTGCTGCTGGTGCACTGAGGACCCTAGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCAATGCTCTTCCGACTCTGATTTTAATGTTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTTCACTCTTCTCCTAATATAAAGAAAGAGGTTCTTTTTGCTGGGGCTCTTCAACCAGTTATTGGATTACTTAGCTCCTGCTGCTCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAGTTCGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGGGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTTCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAGTGGTGGCTTAGTGCCACTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGTGTTCAAAGACTACAGGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTTCCAAGACATTGAAAAGATTAGAGGAGAAGATTCAGGGTCGTGTGCTGAGCCATCTGTTATATCTCATGCGAGTTTCAGAAAGAGGATTTCAAAGGCGAATTGCTTTAGTTCTTGCACATCTTTGTTCTGCAGATGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAATTGCTTATCGGGCTTCTTTGCTCATCTAGCACCAAGCAGCAGCTTGATGGTGCCGTGGCTCTATGCAAGTTGGCCAATAAAGCATCGACTCTGTCTCCTGTAGACGCTGCTCCTCCTTCTCCAACACCACAGGTCTACTTAGGAGAGAAGTTTGTAAACAATGCTACACTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGTTTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATCGGGAGAAGGATGCAAGAGACATAGAGATCCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTTCCGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTAAAGAGACACTGTGAGTACACAATTGCACAGGATATATTACTAGAGAACGTGTCGAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATTCTTTTTATCTTAAAGCACTTTGATAAGTTGAGCGCAAGGCCAGGGCACTCTCTTTTGATTCAGCGTACAATCCCAGAGATCCGCAATTACTTTGTTAACGCTCTTACAAATGCCAACTCCCATAGACAGTAA 2115 0.4478 MEFQRRQGHCLSERKGQKRKLDEESQDEPQISAAPPTADERATVLSEVEYQVNILESTFTWKDTDRAAAKRATHALADLAKNEGVVNVIVEGGAIPALVKHLQAPPVEDCDQKALPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHNNGLTSRAINSLIRRAADAVTNLAHENSNIKTRVRMEGGIPPLIHLLESADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLFAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSSDVQLREMSAFALGRLAQDTHNQAGIAHSGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVSKTLKRLEEKIQGRVLSHLLYLMRVSERGFQRRIALVLAHLCSADDQRRIFIEHHGLELLIGLLCSSSTKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEKFVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTSDIAQDLLRAADQYLLEGLKRHCEYTIAQDILLENVSSMYELSEAFNAISLRHACILFILKHFDKLSARPGHSLLIQRTIPEIRNYFVNALTNANSHRQ 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03174 704 Gene3D - 169 296 IPR011989 -
Vifa3g03174 704 SUPERFAMILY ARM repeat 434 608 IPR016024 -
Vifa3g03174 704 SMART arm_5 311 351 IPR000225 GO:0005515
Vifa3g03174 704 SMART arm_5 81 134 IPR000225 GO:0005515
Vifa3g03174 704 SMART arm_5 185 225 IPR000225 GO:0005515
Vifa3g03174 704 SMART arm_5 135 183 IPR000225 GO:0005515
Vifa3g03174 704 SMART arm_5 352 392 IPR000225 GO:0005515
Vifa3g03174 704 SMART arm_5 227 267 IPR000225 GO:0005515
Vifa3g03174 704 SMART arm_5 269 309 IPR000225 GO:0005515
Vifa3g03174 704 SMART arm_5 467 507 IPR000225 GO:0005515
Vifa3g03174 704 FunFam Armadillo/beta-catenin repeat family protein 530 674 - -
Vifa3g03174 704 Pfam BTB/POZ domain 533 634 IPR000210 GO:0005515
Vifa3g03174 704 MobiDBLite consensus disorder prediction 1 27 - -
Vifa3g03174 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Vifa3g03174 704 SUPERFAMILY POZ domain 531 633 IPR011333 -
Vifa3g03174 704 Gene3D Potassium Channel Kv1.1; Chain A 522 668 IPR011333 -
Vifa3g03174 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Vifa3g03174 704 MobiDBLite consensus disorder prediction 1 39 - -
Vifa3g03174 704 Gene3D - 48 168 IPR011989 -
Vifa3g03174 704 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Vifa3g03174 704 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Vifa3g03174 704 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Vifa3g03174 704 SUPERFAMILY ARM repeat 53 411 IPR016024 -
Vifa3g03174 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Vifa3g03174 704 SMART BTB_4 539 636 IPR000210 GO:0005515
Vifa3g03174 704 Gene3D - 297 419 IPR011989 -
Vifa3g03174 704 Gene3D - 420 521 IPR011989 -
Vifa3g03174 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Vifa3g03174 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 700 IPR044282 -
Vifa3g03174 704 CDD BTB_POZ_ARIA_plant 526 641 - -
Vifa3g03174 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Vifa3g03174 704 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Vifa3g03174 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03174 Vifa-Chr3 915225257 915242116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03174 138 509 U-box Gene Family AT1G23030 24.934 5.07e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa3g03174 BTB 1.3e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03174 - - gmx:100784348 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03174 3 915225257 915242116 Vifa3g03174 3 915225257 915242116 ECH
Vifa1g03987 1 612813553 612822572 Vifa3g03174 3 915225257 915242116 PCT