Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03143 ATGAATGTTGCTACAAGTTTTGAGACAGAGAATTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTATGATGGAATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGACTTTTTGAAAAATCCTCAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAGCATAAGAACATCATGAAGTTCTACACTTCTTGGGTTGATACTACCAATAGACACATTAATTTTGTCACTGAGATGTTCACATCTGGGACTCTGAGACAGTACAGACTTAAGCATAAAAGAGTTAACATAAGAGCTGTTAAGCATTGGTGCAGACAGATTTTGGAAGGTCTCCTCTATCTCCATAGCCAGGACCCTCCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATCGGTGATCTTGGCCTCGCTGCAATTCTCCGCAGATCGAATGCTGTTCACTGCGTTGGAACACCCGAGTTTATGGCTCCCGAAGTATATGAAGAGCATTACAATGAATTGGTTGACATATACGCTTTCGGAATGTGTATATTGGAGATGGTCACCTTCGAATATCCTTATAGCGAATGCAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTCTGGAAAAATGCCAGAATCACTTTACAAAGTAAATGATCAAGAGGTTAAGCAGTTTGTAGAGAAATGTTTGGCAACTGTGTCCCTTAGGCTCTCGGCTAGGGAACTCTTAGATGACCCTTTTCTCCAAATTGACGATTATGGATCTGACTCGAAAGAATTTCAGTTTCAAAGAGGTTGCTATGAAGTAACACCAACACTTAGACAAACTGTGAATGGAAGTTATAGCAATGGCTTAATGAGCTTGGACACTGATAATCCTGGTGGTTATCAAAATGATTTTGATCTCTTTGATTGTGAACAGGATTATAATTTGGATAAAGTTGATACCTCAATCAAAGGTAGGAGAAGAGATGATGGCATCTTTCTGAGAATCAGAATACCAGATAAAGAAGGTCGAGTTCGAAACATCTACTTCCCGTTCGACACGGAGACTGATACCGCATTGAGTGTTGCGTATGAAATGGTTGCGGAGCTTGACGTGACTGACCAAAACTTAACAAAATTAGCAAATATGATAGATAATGAAATCGCAACTTTGGTACCAGGATGGAAAATGGGACCAAGAATAGTTGAAGTTTCAGAAGCTTCTAGTGCAAGTTTCTGTCTCAACTGTGCTGCAAACAATACCTTAGTTGATTATGTATCATCCAATAATCCATGTGCCAAGAATCTTCAATTTTTCCATTGTTCTAAAAGCGGATGTGCCGCGGTTCACGGAAGATTCGAGGAGATTACGTATCAATACGATGGGTCTGCAAACACTGCTACAGAAGCTGAACCACCAAGTCAACCCAATGGCATTCATTATGCAGATATCTGGGGCCAGCGAGACGAACGAGAGTCAAATCATGAAGAACTGAAAGACATTCATTGCGATGAATCTCACGAGAAATCTAAACTATCACTCATAAAGGAGGATGAAGAGGAGAATAGTGTTAATGTAGATGACCAAATTAATCTTAATACCAAAAGGCCTCCTTCTAGCCCTGCAGCATCAGAATGTTCATTATTCTTGGACTATGAAAATGATATAAGGCATGAATTAAGATGGCTCAAAGCAAGGTACCAAATGAATTTAAGAGAGCTTAGAGGCCATCAACTAGGTATTGATGCTGCAAAATGCAACACTTTGGTTGACCAAATTATTCCAAGTATTGCTTGTGATACAAGTCATCCTAACAATTCTCAACAAATGGTCACGGCCAAGGATTTCTTTGCAAGAGCTTTGCTTCCAACCTCGCTTCAAAGGGCAACCTCACTTCCAGTCGATGCAGTTGATGTCTAG 2004 0.3942 MNVATSFETENSEFIEVDPTGRYGRYNEILGKGASKTVYRAFDEYDGIEVAWNQVKLYDFLKNPQDLERLYCEIHLLKTLKHKNIMKFYTSWVDTTNRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSQDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRRSNAVHCVGTPEFMAPEVYEEHYNELVDIYAFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKMPESLYKVNDQEVKQFVEKCLATVSLRLSARELLDDPFLQIDDYGSDSKEFQFQRGCYEVTPTLRQTVNGSYSNGLMSLDTDNPGGYQNDFDLFDCEQDYNLDKVDTSIKGRRRDDGIFLRIRIPDKEGRVRNIYFPFDTETDTALSVAYEMVAELDVTDQNLTKLANMIDNEIATLVPGWKMGPRIVEVSEASSASFCLNCAANNTLVDYVSSNNPCAKNLQFFHCSKSGCAAVHGRFEEITYQYDGSANTATEAEPPSQPNGIHYADIWGQRDERESNHEELKDIHCDESHEKSKLSLIKEDEEENSVNVDDQINLNTKRPPSSPAASECSLFLDYENDIRHELRWLKARYQMNLRELRGHQLGIDAAKCNTLVDQIIPSIACDTSHPNNSQQMVTAKDFFARALLPTSLQRATSLPVDAVDV 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03143 667 CDD STKc_WNK 22 281 - -
Vifa3g03143 667 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03143 667 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 610 - -
Vifa3g03143 667 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vifa3g03143 667 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Vifa3g03143 667 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03143 667 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vifa3g03143 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vifa3g03143 667 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vifa3g03143 667 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03143 667 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03143 Vifa-Chr3 904610712 904613747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03143 1 667 MAP Kinase Kinase Kinase AT3G22420 48.736 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa3g03143 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03143 K08867 - gmx:100804179 1005.36