Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03141 ATGGAACCGGGCACCACTAGAATAGCTAGCCCGTCTGGGGTTGTGGTTAAGAATAGAAGCTCTTCGGGTTGTTTGATTGTGAGAAAGAAAGGAGATGGTTTGGGTGGTGGTTCTTCGAGTTCTCGGAAACAGTATGAATCTAAGAAAGTGAGGAAAAAGGTTAAGGTGGAATCGAGCGATTCGGAATCGAGCGGGGAGTTACTTATGCCGCCTGCTAGGAGGCCCGGTCCTGAGACGATCCGAGTATGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGGAATGTTGGGAGCGGTGAAATTAGTAGGAAGAGGGAGAGAATGGAGCAAATTAGGCGTAATGGGGATGATATGGTTGAGGGGAATGGGTTGGAGAGGAGGGACAAGAAAGTTAAGTTGGAAGTGTTTGATTTTGATGAATATGATGGAGCGGGTGCGGAGAGGATGAGAAGGAGGCAATTTGATGGTGACGGGGTTAGTTTAGGTGGAGGAAGGTTTATGGGAACAATGCATTCTGGTAGAGGCAGCTTTGATAGGGAGTTTGAAAGTGGTTCAAGCAGACACATTGTGGATAAGAGAAAAATTACCTATTTTGACAGAGGAAGGTATCTCAGAGATAGTGTTGACCATAGTAGGATAAAGGTGAAAAGGGAAGGAACTCAGCATACTCCGTCCTTGTTGAAGGAGAAGTTTAACTCTGATGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTCAATAAGAAGAAGCCGGGTGGATCCGTGGAACACTATGAACATCGGAAGCCAGTAGAAAGTAGACTTAGTGGAAGGGCTGAGGGCACTTCTAAGAGGAATGTTCCGATACAACTTCCACCACGCTTAGAAACAAAATCTGCCGAAAAACAGGGCTTACTTCTTAGGCCGGAGAAGAAACAGATAACAAGAAAATCACTCTCAAGCAAGGAGGACAGTAAGGGCGATGAGCAGGATTCTGAAAACAATGACACATCAATGAATCTGGAAGTAAAAAATATTAAAGCTCACACATCTTCAAAAAAGATTACTTCTGAAAATGAACAGACTCCTGTACATGACAAGCTCCCAACAACAAAATCGAGCGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTAAGAGAACAAATACGGGAAATGCTTCTGAATAAAGGATGGACCATAGACTATCGCCCAAGAAGGAATAGAGACTATTTAGACGCAGTTTACATAAATCCCGGGGGAACAGCTTATTGGTCCATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGATTGAGGATGACCAAGAGGCCAAGGCCAAAGGGGCGAGTTCTTCTTTTGCTCCTATTGCAGATGATGTGCTCAATCAATTGACGAGGAAAACTAGGAAGAAGATGGAGAAGGATTTAATGATGAAGAAGAAGAAGCAAAGAGCTGATGACATTGATAGTGGAAAAGAACGGCAGATTAAAAGAACTGCTGGCAAAAAGCATCATATGAATGGCAATGATAGTGATAGCAATGAAGATAAGTTAAGCTCCTATATCAAGCAAGGAGGTAAATCAGTGAAAACTAAATTGCCTGAAAATTCTGTTACCGGCAGTAGCTCTAAAAGCCAGAATGCTACAACTGATAAATCATTTTCTGAAAGTGATCCCAAGCTCCTACACGGAAGGAAAAGTAGAAAACATGGAAGGTGCACTCTATTAGTTCGTAGTTCTAACAAGGGATTGAATTCCGAATCCGATGACTTTGTTCCATATACGGGAAAGCTAACAGTGCTTTCCTGGTTAGTTGACTCGGGGATAGTACAGGTAAGTCAAAAGGTTCAGTATCGCAGGAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGTGGCTGCTGTAGTAAGATCCTTACGGTGTCAAAATTCGAGCTTCACGCAGGAAGCAAATTGCCACAACCATATCAAAACATATATTTAGATTCTGGAGTTTCTCTTCTACAATGCCAGATAGATGCGTGGGAAAAACAAGAGAATTCTGGGAAAATCAGTTTCCATTCAGTAGATGTTGATGGTAATGATCCAAACGATGATACCTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATACAGATGCTTCCCCCTGGGGATTGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAGTGGAACTATTGACAAAGAAAATGATGCAACTGTATATGCCCTACACACTTGTGATTTGTGTGAGAAAAAATATCATGACTGCTGTACTAAGGATATGAGTGCCCTGCTTGCCAACTCCAATATGTCAGGGCATTCCTTTTGTGGAAAAAGTTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTGTCTTGTTCGTAGAACAAACGATGATTCGGAGGCAGCTAGTAGGGGAGTCACCCAGAGGGTGGAATGCAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATTTAATCCATAATAGTTTATATAATAGCGGGTCAAATTTCAGTCGGTTGAATTACACTGGCTTTTATACTGCTATTTTGGAGCGGGGGGATGAAATAATATCTGCAGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAAATGCCATTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACATGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTCATTCCTGCAATTTCTGAACTCGTTCATACATGGACAACAGCGTTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTGTTCCCTGGTATTGATATGTTACAGAAGCTTCTAGTGGAGCCAGGAAAACTTGATGGTAATACAACTGATGAAGATGCTGAGCAATTTGAGAATGGTGGCGTGGTTTCTGTTAATCCCAATGTGGTCAATAGGTTAGATATTGATTCTTTGGCTTTGCAAGATCCCCATGAAAGTGAGGATGCTAGCTCCAATCCTGCCAATAAGATTAACACTGAGTGCAGTGATGCTTCTCAAGATATAAGCAGTCAAGGTTTGACTGGCAGGACTGTATGCTCCAAATCTCATTCTGAAGAAAGATTATCTGATTCTGTTTCAGAAAATTGTGCTTCTCCTTCTAATTCTAGTCATGGTGTACTCGAAAAGAAAAATAAAATATCGACGTCTTCTCCTATCAATGATATTTCTCCTATCAATGATATGTCACCCAAATGTCAACTCATTCCACCAAATGGCAAATCTACAAATGGTCTTCCATCTGATCACTCAGATTGCCATGAACTTCCAGCTTTGTGTCAAGCAACTGCATGTTCTGACCTAGGTACTGTAAAAAATCTGGTTGAACCTGTTTCTGACGGGAAACCCCATGCTTTAACTGATATGAATTGTGGTTTGCCGGGGCTTGCCCGAAATCCTGTGTTGGATTCTCGAGTGGTGGATAATGCTTTGTCTTTTAAAGAGTTTGATATGAATGCTGCCCAAGTTGAGGTTCTTGAAGCTGGTCTTTTAGTCAATCCATCTCAAGGGAACAATATCAAAGAGAAAAATGAAAATGTAGATTACTCTAGTTCTGTTCTTAATAATGCTTTCACTGATATGGATAGTGATTCACCAGAACTTGATCAAAATTCTGTGTTGGATTCCCGAGTGGCGGATAATGCTTTGTCTACTAAAGAGTTTGATATGAATGATGCCCCTGTGGAGGTTCTTGAAGCTGGTTCTTTAGTGAATTTGTCTGAAGGGAACAATACCAAAGTGAATAATGAAAATGTTGATGACTCTGGTTCTGTTCTTAATCATGCTTTCACTGATATGAAAAGTGGTTCACCAGGACTTGACCAAAATCCCGTGTTGGATTCTCAAGTGGCGGACAATTCTCTGTCTTTTAAAGAGGTTGATATGAATGATGCCCATGTTGAGGTTCTTGAAGCTGTTTCGTTAGTGAATTCATCTCAGGGGAACAATACCAAAGAGAATAATAAAAGTGTAGATGTCTCTGATTCTGTTCTTAATCACACTTTCACTTATATAAATAGTGGTTCTCCAGGGCTTGACCAAAATCCTGTGTTGGATTCTCGAGTGGCAGACAATTCTTTGTCTTTTAAAGAGGTTAATATGAATGATGTCCACGTTGGGGTTCTTGAAGCTGGTTCTTTAGTGAATTCATCTCGAGGGAACAATAACAACTGGAATAATAAAAATGTAGATGTCTCTCATTCTGCTCTTAATCACGGTTACACTGATATGAATAGCGATTCTCCGAGGCTTGACCAAAACCCTGTGTTGGATTCGCAAGTGGTGGATAGTGCTCTGTCTTTTAAAGAGTTTGATATGAATGATGCCCTTGTCGAGATTGTTGAAGCTGGTCCTTTAGTGAATTTAACTCAGGGGAACAATACCAAAGAGAATAATGAAAATTCTGTTTTTATTCATGACGGTGAGAGTTCCCTGCAGGTAAGATCTGATTTGAATGGTGAAATTGCATACGAGGGTGAAAAGAAATCACATTTGGACACAAAAGTTGCTTCAAATGAAATGCACTTGATGAAACTGGCCTAA 4761 0.4148 MEPGTTRIASPSGVVVKNRSSSGCLIVRKKGDGLGGGSSSSRKQYESKKVRKKVKVESSDSESSGELLMPPARRPGPETIRVCNSLSALERGGNVGSGEISRKRERMEQIRRNGDDMVEGNGLERRDKKVKLEVFDFDEYDGAGAERMRRRQFDGDGVSLGGGRFMGTMHSGRGSFDREFESGSSRHIVDKRKITYFDRGRYLRDSVDHSRIKVKREGTQHTPSLLKEKFNSDESIRVQGKNGVLKVMVNKKKPGGSVEHYEHRKPVESRLSGRAEGTSKRNVPIQLPPRLETKSAEKQGLLLRPEKKQITRKSLSSKEDSKGDEQDSENNDTSMNLEVKNIKAHTSSKKITSENEQTPVHDKLPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLIEDDQEAKAKGASSSFAPIADDVLNQLTRKTRKKMEKDLMMKKKKQRADDIDSGKERQIKRTAGKKHHMNGNDSDSNEDKLSSYIKQGGKSVKTKLPENSVTGSSSKSQNATTDKSFSESDPKLLHGRKSRKHGRCTLLVRSSNKGLNSESDDFVPYTGKLTVLSWLVDSGIVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENSGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLASGTIDKENDATVYALHTCDLCEKKYHDCCTKDMSALLANSNMSGHSFCGKSCKELFEHLKKYLGTKHELDAGFTWCLVRRTNDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIEHALCSLKVEKLVIPAISELVHTWTTAFGFTHLEESLRQEMRSLNMLVFPGIDMLQKLLVEPGKLDGNTTDEDAEQFENGGVVSVNPNVVNRLDIDSLALQDPHESEDASSNPANKINTECSDASQDISSQGLTGRTVCSKSHSEERLSDSVSENCASPSNSSHGVLEKKNKISTSSPINDISPINDMSPKCQLIPPNGKSTNGLPSDHSDCHELPALCQATACSDLGTVKNLVEPVSDGKPHALTDMNCGLPGLARNPVLDSRVVDNALSFKEFDMNAAQVEVLEAGLLVNPSQGNNIKEKNENVDYSSSVLNNAFTDMDSDSPELDQNSVLDSRVADNALSTKEFDMNDAPVEVLEAGSLVNLSEGNNTKVNNENVDDSGSVLNHAFTDMKSGSPGLDQNPVLDSQVADNSLSFKEVDMNDAHVEVLEAVSLVNSSQGNNTKENNKSVDVSDSVLNHTFTYINSGSPGLDQNPVLDSRVADNSLSFKEVNMNDVHVGVLEAGSLVNSSRGNNNNWNNKNVDVSHSALNHGYTDMNSDSPRLDQNPVLDSQVVDSALSFKEFDMNDALVEIVEAGPLVNLTQGNNTKENNENSVFIHDGESSLQVRSDLNGEIAYEGEKKSHLDTKVASNEMHLMKLA 1586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 351 365 - -
Vifa3g03141 1586 PANTHER PHD FINGER PROTEIN 12 335 1124 IPR042163 GO:0003714|GO:0045892
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 366 384 - -
Vifa3g03141 1586 CDD PHD2_CHD_II 706 745 - -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 297 329 - -
Vifa3g03141 1586 Pfam PHD-finger 706 748 IPR019787 -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 513 555 - -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 255 275 - -
Vifa3g03141 1586 SUPERFAMILY FYVE/PHD zinc finger 695 751 IPR011011 -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 471 573 - -
Vifa3g03141 1586 ProSitePatterns Zinc finger PHD-type signature. 706 745 IPR019786 -
Vifa3g03141 1586 SMART PHD_3 705 746 IPR001965 -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 1051 1086 - -
Vifa3g03141 1586 Pfam Tify domain binding domain 628 678 IPR032308 -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 1049 1154 - -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 255 384 - -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 471 496 - -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 1 80 - -
Vifa3g03141 1586 MobiDBLite consensus disorder prediction 1098 1134 - -
Vifa3g03141 1586 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 893 983 IPR016181 -
Vifa3g03141 1586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 807 IPR013083 -
Vifa3g03141 1586 ProSiteProfiles Zinc finger PHD-type profile. 703 748 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03141 Vifa-Chr3 904518144 904525352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03141 1 1071 PHD Transcription Factor Family AT4G14920 48.449 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa3g03141 TDBD 2.8e-21 No_clan