Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03140 ATGGAACCGGGCACCACTAGAATAGCTAGCCCGTCTGGGGTTGTGGTTAAGAATAGAAGCTCTTCGGGTTGTTTGATTGTGAGAAAGAAAGGAGATGGTTTGGGTGGTGGTTCTTCGAGTTCTCGGAAACAGTATGAATCTAAGAAAGTGAGGAAAAAGGTTAAGGTGGAATCGAGCGATTCGGAATCGAGCGGGGAGTTACTTATGCCGCCTGCTAGGAGGCCCGGTCCTGAGACGATCCGAGTATGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGGAATGTTGGGAGCGGTGAAATTAGTAGGAAGAGGGAGAGAATGGAGCAAATTAGGCGTAATGGGGATGATATGGTTGAGGGGAATGGGTTGGAGAGGAGGGACAAGAAAGTTAAGTTGGAAGTGTTTGATTTTGATGAATATGATGGAGCGGGTGCGGAGAGGATGAGAAGGAGGCAATTTGATGGTGACGGGGTTAGTTTAGGTGGAGGAAGGTTTATGGGAACAATGCATTCTGGTAGAGGCAGCTTTGATAGGGAGTTTGAAAGTGGTTCAAGCAGACACATTGTGGATAAGAGAAAAATTACCTATTTTGACAGAGGAAGGTATCTCAGAGATAGTGTTGACCATAGTAGGATAAAGGTGAAAAGGGAAGGAACTCAGCATACTCCGTCCTTGTTGAAGGAGAAGTTTAACTCTGATGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTCAATAAGAAGAAGCCGGGTGGATCCGTGGAACACTATGAACATCGGAAGCCAGTAGAAAGTAGACTTAGTGGAAGGGCTGAGGGCACTTCTAAGAGGAATGTTCCGATACAACTTCCACCACGCTTAGAAACAAAATCTGCCGAAAAACAGGGCTTACTTCTTAGGCCGGAGAAGAAACAGATAACAAGAAAATCACTCTCAAGCAAGGAGGACAGTAAGGGCGATGAGCAGGATTCTGAAAACAATGACACATCAATGAATCTGGAAGTAAAAAATATTAAAGCTCACACATCTTCAAAAAAGATTACTTCTGAAAATGAACAGACTCCTGTACATGACAAGCTCCCAACAACAAAATCGAGCGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTAAGAGAACAAATACGGGAAATGCTTCTGAATAAAGGATGGACCATAGACTATCGCCCAAGAAGGAATAGAGACTATTTAGACGCAGTTTACATAAATCCCGGGGGAACAGCTTATTGGTCCATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGATTGAGGATGACCAAGAGGCCAAGGCCAAAGGGGCGAGTTCTTCTTTTGCTCCTATTGCAGATGATGTGCTCAATCAATTGACGAGGAAAACTAGGAAGAAGATGGAGAAGGATTTAATGATGAAGAAGAAGAAGCAAAGAGCTGATGACATTGATAGTGGAAAAGAACGGCAGATTAAAAGAACTGCTGGCAAAAAGCATCATATGAATGGCAATGATAGTGATAGCAATGAAGATAAGTTAAGCTCCTATATCAAGCAAGGAGGTAAATCAGTGAAAACTAAATTGCCTGAAAATTCTGTTACCGGCAGTAGCTCTAAAAGCCAGAATGCTACAACTGATAAATCATTTTCTGAAAGTGATCCCAAGCTCCTACACGGAAGGAAAAGTAGAAAACATGGAAGGTGCACTCTATTAGTTCGTAGTTCTAACAAGGGATTGAATTCCGAATCCGATGACTTTGTTCCATATACGGGAAAGCTAACAGTGCTTTCCTGGTTAGTTGACTCGGGGATAGTACAGGTAAGTCAAAAGGTTCAGTATCGCAGGAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGTGGCTGCTGTAGTAAGATCCTTACGGTGTCAAAATTCGAGCTTCACGCAGGAAGCAAATTGCCACAACCATATCAAAACATATATTTAGATTCTGGAGTTTCTCTTCTACAATGCCAGATAGATGCGTGGGAAAAACAAGAGAATTCTGGGAAAATCAGTTTCCATTCAGTAGATGTTGATGGTAATGATCCAAACGATGATACCTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATACAGATGCTTCCCCCTGGGGATTGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAGTGGAACTATTGACAAAGAAAATGATGCAACTGTATATGCCCTACACACTTGTGATTTGTGTGAGAAAAAATATCATGACTGCTGTACTAAGGATATGAGTGCCCTGCTTGCCAACTCCAATATGTCAGGGCATTCCTTTTGTGGAAAAAGTTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTGTCTTGTTCGTAGAACAAACGATGATTCGGAGGCAGCTAGTAGGGGAGTCACCCAGAGGGTGGAATGCAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATTTAATCCATAATAGTTTATATAATAGCGGGTCAAATTTCAGTCGGTTGAATTACACTGGCTTTTATACTGCTATTTTGGAGCGGGGGGATGAAATAATATCTGCAGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAAATGCCATTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACATGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTCATTCCTGCAATTTCTGAACTCGTTCATACATGGACAACAGCGTTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTGTTCCCTGGTATTGATATGTTACAGAAGCTTCTAGTGGAGCCAGGAAAACTTGATGATGCTGAGCAATTTGAGAATGGTGGCGTGGTTTCTGTTAATCCCAATGTGGTCAATAGGTTAGATATTGATTCTTTGGCTTTGCAAGATCCCCATGAAAGTGAGGATGCTAGCTCCAATCCTGCCAATAAGATTAACACTGAGTGCAGTGATGCTTCTCAAGATATAAGCAGTCAAGGTTTGACTGGCAGGACTGTATGCTCCAAATCTCATTCTGAAGAAAGATTATCTGATTCTGTTTCAGAAAATTGTGCTTCTCCTTCTAATTCTAGTCATGGTGTACTCGAAAAGAAAAATAAAATATCGACGTCTTCTCCTATCAATGATATTTCTCCTATCAATGATATGTCACCCAAATGTCAACTCATTCCACCAAATGGCAAATCTACAAATGGTCTTCCATCTGATCACTCAGATTGCCATGAACTTCCAGCTTTGTGTCAAGCAACTGCATGTTCTGACCTAGGTACTGTAAAAAATCTGGTTGAACCTGTTTCTGACGGGAAACCCCATGCTTTAACTGATATGAATTGTGGTTTGCCGGGGCTTGCCCGAAATCCTGTGTTGGATTCTCGAGTGGTGGATAATGCTTTGTCTTTTAAAGAGTTTGATATGAATGCTGCCCAAGTTGAGGTTCTTGAAGCTGGTCTTTTAGTCAATCCATCTCAAGGGAACAATATCAAAGAGAAAAATGAAAATGTAGATTACTCTAGTTCTGTTCTTAATAATGCTTTCACTGATATGGATAGTGATTCACCAGAACTTGATCAAAATTCTGTGTTGGATTCCCGAGTGGCGGATAATGCTTTGTCTACTAAAGAGTTTGATATGAATGATGCCCCTGTGGAGGTTCTTGAAGCTGGTTCTTTAGTGAATTTGTCTGAAGGGAACAATACCAAAGTGAATAATGAAAATGTTGATGACTCTGGTTCTGTTCTTAATCATGCTTTCACTGATATGAAAAGTGGTTCACCAGGACTTGACCAAAATCCCGTGTTGGATTCTCAAGTGGCGGACAATTCTCTGTCTTTTAAAGAGGTTGATATGAATGATGCCCATGTTGAGGTTCTTGAAGCTGTTTCGTTAGTGAATTCATCTCAGGGGAACAATACCAAAGAGAATAATAAAAGTGTAGATGTCTCTGATTCTGTTCTTAATCACACTTTCACTTATATAAATAGTGGTTCTCCAGGGCTTGACCAAAATCCTGTGTTGGATTCTCGAGTGGCAGACAATTCTTTGTCTTTTAAAGAGGTTAATATGAATGATGTCCACGTTGGGGTTCTTGAAGCTGGTTCTTTAGTGAATTCATCTCGAGGGAACAATAACAACTGGAATAATAAAAATGTAGATGTCTCTCATTCTGCTCTTAATCACGGTTACACTGATATGAATAGCGATTCTCCGAGGCTTGACCAAAACCCTGTGTTGGATTCGCAAGTGGTGGATAGTGCTCTGTCTTTTAAAGAGTTTGATATGAATGATGCCCTTGTCGAGATTGTTGAAGCTGGTCCTTTAGTGAATTTAACTCAGGGGAACAATACCAAAGAGAATAATGAAAATTCTGTTTTTATTCATGACGGTGAGAGTTCCCTGCAGGTAAGATCTGATTTGAATGGTGAAATTGCATACGAGGGTGAAAAGAAATCACATTTGGACACAAAAGTTGCTTCAAATGAAATGCACTTGATGAAACTGGCCTAA 4743 0.4151 MEPGTTRIASPSGVVVKNRSSSGCLIVRKKGDGLGGGSSSSRKQYESKKVRKKVKVESSDSESSGELLMPPARRPGPETIRVCNSLSALERGGNVGSGEISRKRERMEQIRRNGDDMVEGNGLERRDKKVKLEVFDFDEYDGAGAERMRRRQFDGDGVSLGGGRFMGTMHSGRGSFDREFESGSSRHIVDKRKITYFDRGRYLRDSVDHSRIKVKREGTQHTPSLLKEKFNSDESIRVQGKNGVLKVMVNKKKPGGSVEHYEHRKPVESRLSGRAEGTSKRNVPIQLPPRLETKSAEKQGLLLRPEKKQITRKSLSSKEDSKGDEQDSENNDTSMNLEVKNIKAHTSSKKITSENEQTPVHDKLPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLIEDDQEAKAKGASSSFAPIADDVLNQLTRKTRKKMEKDLMMKKKKQRADDIDSGKERQIKRTAGKKHHMNGNDSDSNEDKLSSYIKQGGKSVKTKLPENSVTGSSSKSQNATTDKSFSESDPKLLHGRKSRKHGRCTLLVRSSNKGLNSESDDFVPYTGKLTVLSWLVDSGIVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENSGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLASGTIDKENDATVYALHTCDLCEKKYHDCCTKDMSALLANSNMSGHSFCGKSCKELFEHLKKYLGTKHELDAGFTWCLVRRTNDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIEHALCSLKVEKLVIPAISELVHTWTTAFGFTHLEESLRQEMRSLNMLVFPGIDMLQKLLVEPGKLDDAEQFENGGVVSVNPNVVNRLDIDSLALQDPHESEDASSNPANKINTECSDASQDISSQGLTGRTVCSKSHSEERLSDSVSENCASPSNSSHGVLEKKNKISTSSPINDISPINDMSPKCQLIPPNGKSTNGLPSDHSDCHELPALCQATACSDLGTVKNLVEPVSDGKPHALTDMNCGLPGLARNPVLDSRVVDNALSFKEFDMNAAQVEVLEAGLLVNPSQGNNIKEKNENVDYSSSVLNNAFTDMDSDSPELDQNSVLDSRVADNALSTKEFDMNDAPVEVLEAGSLVNLSEGNNTKVNNENVDDSGSVLNHAFTDMKSGSPGLDQNPVLDSQVADNSLSFKEVDMNDAHVEVLEAVSLVNSSQGNNTKENNKSVDVSDSVLNHTFTYINSGSPGLDQNPVLDSRVADNSLSFKEVNMNDVHVGVLEAGSLVNSSRGNNNNWNNKNVDVSHSALNHGYTDMNSDSPRLDQNPVLDSQVVDSALSFKEFDMNDALVEIVEAGPLVNLTQGNNTKENNENSVFIHDGESSLQVRSDLNGEIAYEGEKKSHLDTKVASNEMHLMKLA 1580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 1045 1080 - -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 1043 1148 - -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 351 365 - -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 366 384 - -
Vifa3g03140 1580 CDD PHD2_CHD_II 706 745 - -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 297 329 - -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 1092 1128 - -
Vifa3g03140 1580 Pfam PHD-finger 706 748 IPR019787 -
Vifa3g03140 1580 Pfam Tify domain binding domain 628 678 IPR032308 -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 513 555 - -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 255 275 - -
Vifa3g03140 1580 SUPERFAMILY FYVE/PHD zinc finger 695 751 IPR011011 -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 471 573 - -
Vifa3g03140 1580 ProSitePatterns Zinc finger PHD-type signature. 706 745 IPR019786 -
Vifa3g03140 1580 SMART PHD_3 705 746 IPR001965 -
Vifa3g03140 1580 PANTHER PHD FINGER PROTEIN 12 335 1119 IPR042163 GO:0003714|GO:0045892
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 255 384 - -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 471 496 - -
Vifa3g03140 1580 MobiDBLite consensus disorder prediction 1 80 - -
Vifa3g03140 1580 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 893 983 IPR016181 -
Vifa3g03140 1580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 806 IPR013083 -
Vifa3g03140 1580 ProSiteProfiles Zinc finger PHD-type profile. 703 748 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03140 Vifa-Chr3 904518144 904525352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03140 1 1020 PHD Transcription Factor Family AT4G14920 50.048 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa3g03140 TDBD 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03140 - - mtr:25485216 2382.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03140 3 904518144 904525352 Vifa3g03140 3 904518144 904525352 ECH