Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03129 ATGCCAAGTCTATTCTCAAAACAACTTCACCTCTGCTTCTTCAAACTCAAAAACCCCACAATTCTCTCCCAACCTCACTCACAACAAAACACCACTCCACCACCATCACCACCATACTCCTTCCATTTCAACACAACCTTCACCCACCACCACGACGAACCCGAAGAAGACTATTTCTCCGACGAGACCACAGAACTTCCACCACCCGACTTCGCCTCCGTCTTCGCTTCCCAACGACTCTTCTTCTCCTCCCCGGGCAGCTCCAACTCCATCACGGAATCAGAATCTCCCCCCAACTACACCCCACCCCACAACTCCTTGATACCAAAAGGAGGTAACGTGAAAAGGGTGCCAAAATACTCTGTGAACCCTTACGTTGATTTCCTCCGTTCTATGCAGGAAATGATTCAATCTCAACAACAAGTCTTCGATGTTACTAATGATTGGGATTATCTTCATGAGCTTCTACTATGTTACCTTACTCTCAATCCTAAACATACTCACAAGTATATTGTTCAAGCTTTCACTCACCTCCTTGTCGACCTTTTATCTTCTTCCTCCTCCTCCTCCTCCTCTTCATCATTCTCCTCTTTGCCGCCACGTTCACCGCCTTCTCCGAATCCCAATAACAGACTCCGATAA 642 0.4688 MPSLFSKQLHLCFFKLKNPTILSQPHSQQNTTPPPSPPYSFHFNTTFTHHHDEPEEDYFSDETTELPPPDFASVFASQRLFFSSPGSSNSITESESPPNYTPPHNSLIPKGGNVKRVPKYSVNPYVDFLRSMQEMIQSQQQVFDVTNDWDYLHELLLCYLTLNPKHTHKYIVQAFTHLLVDLLSSSSSSSSSSSFSSLPPRSPPSPNPNNRLR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03129 213 ProSiteProfiles OVATE domain profile. 117 181 IPR006458 -
Vifa3g03129 213 MobiDBLite consensus disorder prediction 86 101 - -
Vifa3g03129 213 Pfam Transcriptional repressor, ovate 121 182 IPR006458 -
Vifa3g03129 213 MobiDBLite consensus disorder prediction 86 112 - -
Vifa3g03129 213 MobiDBLite consensus disorder prediction 186 213 - -
Vifa3g03129 213 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 42 185 IPR038933 GO:0045892
Vifa3g03129 213 NCBIfam uncharacterized plant-specific domain TIGR01568 119 184 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03129 Vifa-Chr3 901125172 901125813 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa3g03129 Ovate 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03129 - - mtr:25485200 264.618