Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03105 ATGTTCTCTTTCCCTAATAATTTCCCTTCATCTTCTTCTTCTTCTTACCCTAATAATAATAATAATAATAATAATACCCTTTCTTTTCTTATAGACAACAACCCTCAAAATAATGATTTTCCATCTCTTCTTGATGATCCACTTTCTTCTCTTCCTTTCACTACTTCAACAAATCATCATGAAGTTGTTGTTCCCTTATACCATGATCATGAAACAACTATTGCTTCAAACTTGGCTGTTTCTGATTATCACAACAATAACACTTCGATGTTTGAGCCTCCAGACTCTTCCAACTTTGGTGGTTTTTCTAATTTTCTTGTGACACAGAAACAACCGACGGTGATTGTTGGAAAAAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGATAGAAGAGTGAGATTGTCAAGTGAAATAGCTAGAAAGTTCTTTGATCTTCAAGATATGTTGGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTCTTCAATAAATCTGATACCGCAATCAAAGAACTAGCTCGAACTAAAAACGCGTGTTACAACAACGACGATAACAACAACAACAACAACGCGTTTTTTGATTCGAATAGCAACAAATCGTTCTCCGGCGGCGGTGGGGACGGTGGTTGTTCGAAAGGGAGAAAATTGAAATGGACTCAAAAAGAAGAAACAAAAAAAGAGTCAAGAGAAAGAGCCCGAGCCCGAGCAAGAGAAAGAACCTGCTACAAGATGTGTAGCAGCGGAAGAATGCAAGAAGAAATTCGCTACTCTTCCGCCGCAGATTCAACTGCAAATGCTCAAATGCTACAACAATTGATGTCTTCGACGTCATCGCCGCTTGATAGTACTACTGAAACTGAGGCATACGCGAGATGGCGTCATCTTCTTCAGCTTCAAACCTATAACAATCCTAGCTACAGTCAAAATCATCAAAACCTAATGGATAGTGAAATACCTAGAGATCATGGTGGATTCAATTTGATTGAAGAATCTATTATGATAAAAAGGAACATGATGTCGATGCTCCAATTTTTGTGGAGTAGCCACCATGAATCTATCAACATGCTTCATGAATCAGTGAGGTTGAAAAGTATGGAAAATCTTGGGAGGAGTGAAAGAATCAGAAGCTACACAAATTTGCTAGTTTTCGGTAATATCTGA 1173 0.3819 MFSFPNNFPSSSSSSYPNNNNNNNNTLSFLIDNNPQNNDFPSLLDDPLSSLPFTTSTNHHEVVVPLYHDHETTIASNLAVSDYHNNNTSMFEPPDSSNFGGFSNFLVTQKQPTVIVGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFNKSDTAIKELARTKNACYNNDDNNNNNNAFFDSNSNKSFSGGGGDGGCSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQEEIRYSSAADSTANAQMLQQLMSSTSSPLDSTTETEAYARWRHLLQLQTYNNPSYSQNHQNLMDSEIPRDHGGFNLIEESIMIKRNMMSMLQFLWSSHHESINMLHESVRLKSMENLGRSERIRSYTNLLVFGNI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03105 390 ProSiteProfiles TCP domain profile. 118 176 IPR017887 -
Vifa3g03105 390 MobiDBLite consensus disorder prediction 207 236 - -
Vifa3g03105 390 ProSiteProfiles R domain profile. 230 247 IPR017888 -
Vifa3g03105 390 Pfam TCP family transcription factor 117 250 IPR017887 -
Vifa3g03105 390 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g03105 390 MobiDBLite consensus disorder prediction 218 236 - -
Vifa3g03105 390 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 96 321 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03105 Vifa-Chr3 892537322 892538736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03105 116 249 TCP Transcription Factor Family AT1G67260 46.405 2.39e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa3g03105 TCP 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03105 - - psat:127091957 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03105 3 892537322 892538736 Vifa1g04026 1 618289221 618290813 PCT