Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03096 ATGGAATCGGAAGTTGGGGGTGGTAGTACCCCTAAGACAGAATCGGAAGCTGAAGCTTTGAACTCAAAAATGAAGAAGAGCGGAAATCTAAGTGGCAAAGATATGATTTTCAGAGCTGACAGAATTGATTTGAAAACTTTGGATGCTAAGCTCGAAAGGCACTTAAGCAGGGCTTATTCAAGAAGCACCGAGGCAAAGAGGCCTAGAGAAGAGTGGGAGGTTGATTTGGCCAAATTGGATTTACGATATGTTGTTGCGAATGGAGCTTATGGCACTGTCTATCGGGGAACTTATGACGACCAAGATGTTGCCGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTTGCCAGTGTTAATGAAATTGCTGCTTTACGAGCAGCATTTCGGCAGGAGGTTACTGTCTGGCAAAAACTTGATCATTCAAATGTCACAAAATTTGTTGGAGCTTCAATGGGCACTTCAAATCTTAAGATTCCTTCAGACACTGGTGGTCAAAATCCCCTTCCTTCGAAGGCGTGTTGCGTTATTGTTGAGTTTGTTCATGGTGGGACATTAAAACAGTTCTTGTTGAAAAATAGGCGGAAGAAACTTGCATATAAGGTTGTGGTTCAGTTGGCTTTGGATCTTGCTAGAGGTCTTAGTTATCTACATTCAAAGAAAATTGTTCACCGCGATGTAAAAACTGATAATATGTTGTTGGATGAAAATCAAAATTTGAAAATAGCTGATTTCGGAGTTGCTAGGGTTGAAGCGGTAAATCCAAGTGAAATGACAGGTGAAACTGGAACCGTTGGATATATGGCGCCAGAGGTTATAAATGGTAAGCCTTACAACAGAAGTTGCGACGTCTACAGCTTTGGCATTTGCTTGTGGGAAATTTATTGTTGTGACATGCCTTATCAAAACCTAAGTTTTGCTGACGCTTCGTCTGCCGTTGCTAATAAGAATTTACGACCAGATATTCCTCGATGTTGTCCAAGTGAGTTAGCAACTATAATGAAAAGATGTTGGGACAAACATGCAGAAAAGCGTCCTCAAATGCAAGAAGTGGTGAGAATGATGGAAGAACTTGATACAAGCAAAGGAGGGGGAATGATACAAGAAGACCAGGCTCCATTTTGTTTTTGCTTTAAGCCTGTTCGTGGTCCATAA 1152 0.4167 MESEVGGGSTPKTESEAEALNSKMKKSGNLSGKDMIFRADRIDLKTLDAKLERHLSRAYSRSTEAKRPREEWEVDLAKLDLRYVVANGAYGTVYRGTYDDQDVAVKVLDWGEDGVASVNEIAALRAAFRQEVTVWQKLDHSNVTKFVGASMGTSNLKIPSDTGGQNPLPSKACCVIVEFVHGGTLKQFLLKNRRKKLAYKVVVQLALDLARGLSYLHSKKIVHRDVKTDNMLLDENQNLKIADFGVARVEAVNPSEMTGETGTVGYMAPEVINGKPYNRSCDVYSFGICLWEIYCCDMPYQNLSFADASSAVANKNLRPDIPRCCPSELATIMKRCWDKHAEKRPQMQEVVRMMEELDTSKGGGMIQEDQAPFCFCFKPVRGP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03096 383 FunFam Kinase suppressor of Ras 1 68 162 - -
Vifa3g03096 383 Gene3D Phosphorylase Kinase; domain 1 68 161 - -
Vifa3g03096 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Vifa3g03096 383 Pfam Protein tyrosine and serine/threonine kinase 82 353 IPR001245 GO:0004672|GO:0006468
Vifa3g03096 383 MobiDBLite consensus disorder prediction 1 28 - -
Vifa3g03096 383 PIRSF ILK 8 364 - -
Vifa3g03096 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 61 357 - -
Vifa3g03096 383 CDD STKc_MAP3K-like 88 354 - -
Vifa3g03096 383 SUPERFAMILY Protein kinase-like (PK-like) 62 354 IPR011009 -
Vifa3g03096 383 ProSiteProfiles Protein kinase domain profile. 79 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03096 383 PRINTS Tyrosine kinase catalytic domain signature 281 303 IPR001245 GO:0004672|GO:0006468
Vifa3g03096 383 PRINTS Tyrosine kinase catalytic domain signature 325 347 IPR001245 GO:0004672|GO:0006468
Vifa3g03096 383 PRINTS Tyrosine kinase catalytic domain signature 177 190 IPR001245 GO:0004672|GO:0006468
Vifa3g03096 383 PRINTS Tyrosine kinase catalytic domain signature 215 233 IPR001245 GO:0004672|GO:0006468
Vifa3g03096 383 SMART serkin_6 79 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03096 383 Gene3D Transferase(Phosphotransferase) domain 1 182 370 - -
Vifa3g03096 383 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03096 Vifa-Chr3 888348102 888352304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03096 28 383 MAP Kinase Kinase Kinase AT3G22750 73.669 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa3g03096 PK_Tyr_Ser-Thr 8.9e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03096 - - gmx:100803917 619.772