Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03094 ATGGAATCCAATAATCCTTACGAGATTCTCGACGACGATGATGGTTTTGATTGGGAAGCAGCTGCGAGAGAAATCGACGCGGTTTGTCAAATGAGAAGTGACGCGAAAACGAACGAAAGCGAAGCGGAAAAGGTTTGTCAAAAGGGGAAGGGGAAGGGAAAGGGAAAGGGAAAGCAATCGACTCTTGATAGTTTTGTTGGAATTGCGGAAAAGGAAAGTGAAACGAATCCAGTTCGAGAAAATGATGCTGAAGAATCTATCTGTGACCATCATATTGACAATGAAGCAGCCAAAACTTGGATATATCCAGTTAATGTTCCTCTCCGCGACTATCAATTCCATATTGCCCAAACTGCACTCTTTCAAAACACTCTGGTCGCCTTGCCAACAGGACTTGGCAAAACTCTCATTGCTGCTGTTGTCATGTATAACTACTTTAGATGGTTTCCTGAGGGAAAAATAGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAACATTGTTGGGATACCGCAAGAATGGACAGTTGATATGACCGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTGTGGAAAACGAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGACATTCATTCTGGTAAGTGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCGTATTGTGAAGCAGTTCGCGAGTTAATGGCTGTACCAGTGCAACTAAGGATATTGGCATTAACCGCAACACCAGGATCCAAGCAGCAGACTGTCCAGGATGTTATTGATAATTTGCATATCTCCAAGCTTGAACATCGCAATGAAACTGACCACGATGTTATGCCGTATGTTCACGACAGGAAGATAGAGTTGATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATCGCAACCAAGCTTACTAATATTGGGGCAATTAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAAGGGCAGATGCAAGATCCTTCACATAACAACTACATAGATGTTGAAGGGTATTTTGGAGTTCTCATTACTCTTTATTACATCCACAAACTTCTTTCAAGTCATGGAATAAGACCAGCTTATGAGATGCTTGAGAGAAAATTGAAGCAAGGGTTTTTCGCAAAATATATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCACCAAAGCTTGTCTCATGGAGCGTCAAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTTCAGGGAAAGTGTCAGGGACATAATGGTTGCAATTGGAGGTATCGGGGATCAAATTAGAGCCACCGAGTTTATTGGTCAAAGTTCAGGAAAAACAACGAAAGGTCAGTCCCAGAAAGTTCAACAGGCCGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACAGGAAGAAAACATGATGGCCGAGTTGTAGTTTTGGCTTGTGAAGGGGCAGAGTTGAAAGGCTACTTGAAAAAAAAGGCAAAGAGCAAGACTATAACTAAACACATGCGAAATGGGGGCATAAATAGCTTTGTCTTTCATCCCAGTCCAAGGATGATTCCCCACATCTTTAAACCTGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCTCGTCATAATAATGTGAGAGAAAACCATCTTCAAACTTCTGCATCCAAAGACGAACTCACTCTTGCTGAAACTGATTTACTCGGAAAATATTTTCACTCTACTGGAGAAAATAGATGTAGATTGTCTCTTATCGCCTTCCCTCACTCTCAGACATTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTGTGGAACATGGATGTTTATAGACATGATGCAACGTTTGCAAGGACTGGCAGCATGTGCAGGAAATAACGAAAATTCTACTCTTCAGGAAGGAAGGTGTTTAGAAAATAGTAAGCCACTTGTCAGTACTGAACTTGATGAAGCTAAAAATGACAATAGGGATACAATGGGAAGAAATATAGATTCTGAAAATTGTCTGAAGGTGGATTCCTGTCATATGGAAATTGAAGACTTTGTTGATCTAACTCTACAAGATAATACTTTCTGTGACACGGGTGAGTGTCAAGAGGAAACAGCTGATGGTGATGAGACAATTCCTGAGACTCCAGATGCTAAGAGGAATTTGTCAAATGAAGGAGCTATTGCCACTGAAATAGCAAATTCTGTTGAGAAACAGACTTCTTCACTGGCTGCAGATGCATGCGATAACGGCATGAGAGATGAAGAGCTTAGCCCTCGTTTAACTAATTTGATTATAAGTGGTGTTGTTCCCGAGTCTCCCATTGAGGAAAGAGGGAAGTCAAGAAACAAGTTTGTCATCCGAGGCTGTATTTCACCAGTTCATCTCCAGGAACAACAAGATGCCGCCTCTTTGAGTTGTAGGGAAACTGAAAATGTCATCATTGATAGTGACAATGGTAAAAACGTATGTACTTCCCCTGTTAATGATAGTGACAACGGTAAAAATGTATGTACCTCCCCTGTTAATGAAACCCAAACCCCTTTGCTTGAGCTGAAGAATTGTGTGATTAGAAGAGGACGAGTCTTTGTTTCTCAAATTGAGGAAAGGCATATGCATATTGTTGATCCAAGCATCAGTGAAGAATCACATCCAAGTTGTGGTGAAATGTCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGGAAAATTGAAGATACTGAAAGTAATATGAATCAGAAAAACAATAATATTTTTGATTCAACGGCAAACTTTTCAAAACCAGCTCCTGCCACCAATCGCAAACGATATAAGCATGGCCAAGGTTTAAGGAAACCAGCTAATGTGAGAGTAAGAGACTTCATTGAGGAGGAAGCTGAGGTATCTTCAGATGCCTCCGTATCTAATGATGAAGATGCCGAGGATGACAATTCTGTTGACAGTTTCATAGATGATCAAACTAACCTTACAGCAGTCACTCAGCCTGGAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCATTGCTCAGTCAAACACCGATTAGTGGAGGGCCCAAGTTTTCCACCAATTTCAGTCCTGACAATGTGACAATGACAGCCAATATTGGTGAAAGTGGTAATTCATCAGTCAATACAGCGAGTCGTTTCCAGACAGGACATACCAGTCATTCAGCTAATCGAACTTCAGAATTAATAAGTACTGACTGTATAACCTCAGAAGCAGGGCCTTCAACTAGTGTTCCAACTGAGACAGATATAAGAAGCCGTAAAAGAAGATTGACATTTCTTAATTCTGGACACTTTCCAAGTATGAATCTTGAACACGAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATACCGATGCAACTATAGCTGTTCTATGTGATGATCAATTCCTTAATACTCTTGATCTTGATGAGTTGGAGGCGCAGGCAACTTCTATTCTTAAACAGAAATCGGATTCTTCAAATCAGAAGCAAGATATAAGTCCTCCATCTCATGAACTGAACCTTGATATTATTATGACTCCATCATTCGATCTTGGTATATGA 3828 0.4018 MESNNPYEILDDDDGFDWEAAAREIDAVCQMRSDAKTNESEAEKVCQKGKGKGKGKGKQSTLDSFVGIAEKESETNPVRENDAEESICDHHIDNEAAKTWIYPVNVPLRDYQFHIAQTALFQNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPVQLRILALTATPGSKQQTVQDVIDNLHISKLEHRNETDHDVMPYVHDRKIELIQVAMGQDAVEINNKFLEVIRPIATKLTNIGAINRDYRTLSPCVLLEMREKFRQGQMQDPSHNNYIDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGFFAKYMSKNEDILKARQLMHQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNFRESVRDIMVAIGGIGDQIRATEFIGQSSGKTTKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYLKKKAKSKTITKHMRNGGINSFVFHPSPRMIPHIFKPEVQYVELSIEKFIPRHNNVRENHLQTSASKDELTLAETDLLGKYFHSTGENRCRLSLIAFPHSQTFPSRVHKVKHSCGTWMFIDMMQRLQGLAACAGNNENSTLQEGRCLENSKPLVSTELDEAKNDNRDTMGRNIDSENCLKVDSCHMEIEDFVDLTLQDNTFCDTGECQEETADGDETIPETPDAKRNLSNEGAIATEIANSVEKQTSSLAADACDNGMRDEELSPRLTNLIISGVVPESPIEERGKSRNKFVIRGCISPVHLQEQQDAASLSCRETENVIIDSDNGKNVCTSPVNDSDNGKNVCTSPVNETQTPLLELKNCVIRRGRVFVSQIEERHMHIVDPSISEESHPSCGEMSVSIKPARKFKRLRKIEDTESNMNQKNNNIFDSTANFSKPAPATNRKRYKHGQGLRKPANVRVRDFIEEEAEVSSDASVSNDEDAEDDNSVDSFIDDQTNLTAVTQPGASRMDMMAIYRRSLLSQTPISGGPKFSTNFSPDNVTMTANIGESGNSSVNTASRFQTGHTSHSANRTSELISTDCITSEAGPSTSVPTETDIRSRKRRLTFLNSGHFPSMNLEHEFALQSKKESVNTDATIAVLCDDQFLNTLDLDELEAQATSILKQKSDSSNQKQDISPPSHELNLDIIMTPSFDLGI 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03094 1275 CDD DEXDc_FANCM 106 287 IPR044749 GO:0005524
Vifa3g03094 1275 MobiDBLite consensus disorder prediction 1048 1070 - -
Vifa3g03094 1275 Pfam Helicase conserved C-terminal domain 447 563 IPR001650 -
Vifa3g03094 1275 Coils Coil 1230 1250 - -
Vifa3g03094 1275 Gene3D - 104 298 IPR027417 -
Vifa3g03094 1275 CDD SF2_C_FANCM_Hef 438 572 - -
Vifa3g03094 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 575 IPR027417 -
Vifa3g03094 1275 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 440 611 IPR001650 -
Vifa3g03094 1275 FunFam ATP-dependent RNA helicase, putative 426 598 - -
Vifa3g03094 1275 MobiDBLite consensus disorder prediction 33 60 - -
Vifa3g03094 1275 FunFam Fanconi anemia, complementation group M 103 298 - -
Vifa3g03094 1275 MobiDBLite consensus disorder prediction 1241 1257 - -
Vifa3g03094 1275 MobiDBLite consensus disorder prediction 1001 1031 - -
Vifa3g03094 1275 Gene3D hef helicase domain 312 432 - -
Vifa3g03094 1275 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 3 1257 - -
Vifa3g03094 1275 SMART ultradead3 104 304 IPR014001 -
Vifa3g03094 1275 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 283 IPR014001 -
Vifa3g03094 1275 Pfam Type III restriction enzyme, res subunit 121 265 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vifa3g03094 1275 CDD FANCM_ID 315 428 IPR039686 GO:0006281|GO:0043138
Vifa3g03094 1275 SMART helicmild6 474 564 IPR001650 -
Vifa3g03094 1275 MobiDBLite consensus disorder prediction 1001 1018 - -
Vifa3g03094 1275 Gene3D - 433 598 IPR027417 -
Vifa3g03094 1275 MobiDBLite consensus disorder prediction 1052 1070 - -
Vifa3g03094 1275 MobiDBLite consensus disorder prediction 1241 1260 - -
Vifa3g03094 1275 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03094 Vifa-Chr3 887434831 887450422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03094 395 562 Eukaryotic Initiation Factors Gene Family AT3G13920 26.374 1.18e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03094 K10896 - gmx:100820078 1555.81