Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03091 ATGATGACACCGCCTCTTTCCAACTTAGCAAAAGAGGATGATGAGTCTTTCTTAAACTACCTCAAGAGTCTACCTCCTATAGACACCAACAACTGTGGAGCATCTTTGAATTCACTTGACATGGATTCTACTCCTACATTTCACTCCTACGTCATATCAAACTTTCTCGCCTTAAATGAGCCCATGAGAAATAACCCTTTAGATACATCAATGCCTCAACATTTTTCTGAGGATGCAAATAAAATACATTCACATGAAGAAGCTGATAAAGTTATTGCCACCCAAGATTACTCACCTGGACATCATCCTTTAATCTCAAGTGATGAGTACCCTAACTATCTGCTAGACTTTCTTGCCATGCCAGTACCGAATGATATCTATGTACAAGATGGTGCTATGAAAGATTCAGTTGAGGGTGGAAATTATATTCAAGAAGTAGGTCAGATCGAGGCAAACATTGAAGTTCCAGATTGTGATGGCGAAAACGTTATTAGTGAAATGCAATCTTTAACTTTAATGGATAGAAATCCAATTGAGTGGAAGAATGCTAGTAATAAAATGTGTGGGAGTACTAACATAATGCCATTTCAGGACCTAACAAATAAACAGTTGAATCCTCCAAACTTGAAAAGGAAGAGGACATGTCAGATTGATTTGGATACTTCTTGCTTAACAAATGAAAATCAGGAAGAAACTGTTGATTTCTATAAGAGACCTTGTTCATGTCAAAACTGCTTGAATAGACCTATTAACAAAGATAAAATCCTGGAAGCTCGCAAGAAGATTGTGCCTAAAGTTGAGGACCCCAACAAAAGCGGATGCAAATGCTATAAATCAAACTGCCTAAAGAAATATTGTGAATGTTTTAAGGCTGGTGATGGTTGCTCCCCGAGTTGTAACTGTCGAGGATGTGAGAATATACATGGTAGAAGGATCGTGTGGTTGGAACAAAATCTCAGCTTGAAGAACTAG 972 0.3796 MMTPPLSNLAKEDDESFLNYLKSLPPIDTNNCGASLNSLDMDSTPTFHSYVISNFLALNEPMRNNPLDTSMPQHFSEDANKIHSHEEADKVIATQDYSPGHHPLISSDEYPNYLLDFLAMPVPNDIYVQDGAMKDSVEGGNYIQEVGQIEANIEVPDCDGENVISEMQSLTLMDRNPIEWKNASNKMCGSTNIMPFQDLTNKQLNPPNLKRKRTCQIDLDTSCLTNENQEETVDFYKRPCSCQNCLNRPINKDKILEARKKIVPKVEDPNKSGCKCYKSNCLKKYCECFKAGDGCSPSCNCRGCENIHGRRIVWLEQNLSLKN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03091 323 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 272 306 IPR005172 -
Vifa3g03091 323 SMART CXC_2 269 310 IPR033467 -
Vifa3g03091 323 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 270 311 IPR044522 GO:0003700
Vifa3g03091 323 ProSiteProfiles CRC domain profile. 211 309 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03091 Vifa-Chr3 886713358 886714945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03091 164 311 CPP Transcription Factor Family AT3G22760 35.079 2.25e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa3g03091 TCR 7.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03091 - - psat:127096180 246.514