Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03090 ATGATGACACCGCCTCTTTCCAACTTAGCAAAAGAGGATGATGAGTCTTTCTTAAACTACCTCAAGAGTCTACCTCCTATAGACACCAACAACTGTGGAGCATCTTTGAATTCACTTGACATGGATTCTACTCCTACATTTCACTCCTACGTCATATCAAACTTTCTCGCCTTAAATGAGCCCATGAGAAATAACCCTTTAGATACATCAATGCCTCAACATTTTTCTGAGGATGCAAATAAAATACATTCACATGAAGAAGCTGATAAAGTTATTGCCACCCAAGATTACTCACCTGGACATCATCCTTTAATCTCAAGTGATGAGTACCCTAACTATCTGCTAGACTTTCTTGCCATGCCAGTACCGAATGATATCTATGTACAAGATGGTGCTATGAAAGATTCAGTTGAGGGTGGAAATTATATTCAAGAAGTAGGTCAGATCGAGGCAAACATTGAAGTTTCAGATTGTGATGGCGAAAACGTTATTAGTGAAATGCAATCTTTAACTTTAATGGATAGAAATCCAATTGAGTGGAAGAATGCTAGTAATAAAATGTGTGGGAGTACTAACATAATGCCATTTCAGGACCTAACAAATAAACAGTTGAATCCTCCAAACTTGAAAAGGAAGAGGACATGTCAGATTGATTTGGATACTTCTTGCTTAACAAATGAAAATCAGGAAGAAACTGTTGATTTCTATAAGAGACCTTGTTCATGTCAAAACTGCTTGAATAGACCTATTAACAAAGATAAAATCCTGGAAGCTCGCAAGAAGATTGTGCCTAAAGTTGAGGACCCCAACAAAAGCGGATGCAAATGCTATAAATCAAACTGCCTAAAGAAATATTGTGAATGTTTTAAGGCTGGTGATGGTTGCTCCCCGAGTTGTAACTGTCGAGGATTCATCGCCGCTTCATCCACCGACGACAGCGGCATCCCGTCTCAAGATCTCGCAGTTCTCCTCGAATACAATTTTGAAGGAAGATATGATCTAGTTAGGTTCATTAAGACAGTGCAAAAAGTGGGGCTCTATGTTAATCTTCGCATTGGACCTTATGTTTGCGCCGAGTGGAACTTTGGGGGAATTCCTGTTTGGTTGAAGTATGTTCCGGGTATAAGCTTTAGAACCGATAATGAGCCTTTCAAGGCTGCAATGCAAGGTTTTACTCAGAAGATTGTTCAAATGATGAAGAGTGAAAACTTGTTTCAGTCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAGAACGAATACGGACCAGAGAGCAAGGCGATGGGAGCTGCTGGTCATGCATACCTAAATTGGGCCGCATATATGGCTGTTGGATTGGGAACAGGAGTCCCTTGGGTGATGTGCAAAGAAATTGATGCCCCAGATCCTGTGATTAATTCGTGTAATGGCTTTTACTGTGACGATTTCTCTCCAAATAAACCATATAAGCCTAGCATGTGGACCGAGTCTTGGAGTGGCTGGTTTACCGAATTTGGTGGCCCGATTCACCAGCGACCAGTTCAAGATCTGGCATTTGCAGTTGCTCGTTTCATTCAGAAGGGCGGATCATATGTGAATTACTACATGTATCATGGAGGAACTAATTTCGGACGTTCCGCTGGGGGTCCGTTCATTACTACAAGCTATGATTACGATGCTCCAATCGATGAATATGGTTTGATTAGGCAACCGAAATATAGCCATTTGAAGGATCTTCATAAAGTGATCAAGCGATGCGAGCATGCTTTGGTTTCTTCGGTCCCTACTGTTACATCGTTAGGAACATACCAGCAGGCTCATGTATTCTCTGCAGGAACTGCAGGATGTGCAGCTTTTCTCGCAAACTATCATGTACAATCTGCTGCTACCGTAGTTTTCAATAATAAGCACTATGACTTGCCTCCATGGTCCATAAGCATCCTTCCCGATTGCAAAACTTCCGTATTTAATACCGCAAAAGTAAGAATATCTTGCAGGACCTATTATGGCTTGTCCTTTTCATCAATCAAGTCTCTAACATCACAGCAACTAGTACGCATTCATCAGTTGTTTCGTCAAGCCAAATTTGATGATCCCAGTGGTCATTGTCTTAGCCCTGCTGGCGAATACAATCTTCGATTAGGAATTATAAAAGAACTTCACCCAGACATGGTTGCAACATATTTTGGCAGTGCTCAAGTTTTTGAAGGCCACCCTTTCATTGTGGAAGCAGGAATCAGTATAGGTGGAAAAGATGTCAAACAAATATCTCCAGGTGTTTGGTTCATTGGTCTTTTCAATGGCATTGGACCTACAAGAACACAGTCGAAGATGATTATCCGAGGTCCAGCATACTCCTTTGCTGCCAATATAACTGTGGAAGCATGTACAAATTCAATGATGATGGGAGATTTCTGTAACAGTCCCGTTTATCCATTTTCATGCACAACATCTAATGTCAATAGTACTTTGAAAGCTACAACGGTGAACGAGACAATGCTGGAAAATTTGATGACCTGCAAAAGTAGTTTGAAAACTTTTTGTGCTGATGAAAGCGTATCATACATTTTCTCCTTTGATATAATAAATGTGGCAGACGAATTTACTATTATGGCAAGTGATGTCAAATTCAATGTCACGCCTTCAAACAAAACATCTGGTGCAAATGATATCAGTTTAATGTGCTTTGTTCGCCATGGTTCAATGCCTTCAGTTGCTTCGTTCGATTACTCCAGTGATTTAAGTAAAGTGCCGCTGGTTATTCATTCTCCATTAATCGTGGAATCTCATGTGCTTCAATGCCCACTTGGGAATGCTGGTCCAAATTGTACAATGGATATTTACACGCTTCAGACATTTGTACGGAGAGGTCCAACTCCCTTTGAATCATATTATTTACCGGTTAGCGTTGGAGCATCTTATACTTCTGCCAATTTCCCTCTTGAACCACTTTTGAGTTACTCATCATACAATGGCGAACCTGGTAACATTTGGACTTATTTACTTTTGGACATTCCTCGTGGTGCAGCCGGAGGAAATATTCATGTACAACTATCCTCAGACGTGAAGATCAATTATGAAGTTTACATTAGATTTGGTGGACTACCATCTCTTATTAACCGAGACTATCATTATGTTAACAAGTCAATAAAAAGCGACACATCTATGTTTTTCATGCTATATGATTCGAGTGATGACAAGATCAATTTCTATATTATGTATGCTAGAGAAGGAACTTGGGGTTTTGGTCTTAGATATCTTAATACCAGCCACGATCCTTCAAAAGGGCCAACTGTCATGTCTCTTTCGCTTGAACGATGCCCGAAACGTTGTTCCTCTCACGGGGACTGTAAATTTTCTTTTGATGCAAGTGGCTTGACATCATACAGCTTCTGCTCTTGTGATCGAAACCATGGAGGCATCGACTGTAGCATTGAAATTGTATCACATCAAGGGCATATACGACAATCATTTTTTCTCATTGTATCAAATGCTGCGGTCATACTTCCTGCCTATTGGGCCCTTCGGCAGAAGGCATTAGCAGAATGGGTTTTGTTCACATCTAGTGGAATTGCTAGTGGACTATATCATGCTTGTGATGTAGGTGCTTGGTGTGCATTAAACTTTAACGTCTTACAGTTCATGGACTTCTGGCTCTCTTTCATGGCTGTGATTAGCACTTTTCTTTATCTAGCTACCATTGATGAAGTATTGAAGAGGGCAATCCACACAGTTGTTGCTATCCTTACTGCTCTAATGGCTGTAACAAATGCAACCAGGTCTTCCAATGTTGTTCTTGTGATGGTGATTGGTGCTCTTGGTCTCCTTATTGGATGGGTTATAGAGCTGTCAACAAAGTATAGGTCCCTTTCATTTTCAGTTAGATTCTCACTTGATTTCTCTCAGATTTTACAGGTGATAAAGCGATGGATATGTAATCTTATTGGAACACTTCTAAGACGGTATCACTGGCCTTTTGCATTAGCTGGTTTTTCTGCACTGTCACTGGAAATATTAAGCCGGACACTTGAAACCAGCGAAAATTACTGGTTTTGGCATAGCTTTTGGCATATTTCAATATACACATCTTCTTTCTTCTTCCTTTGTTCAAAAGCAAATATTCGTAGTAACAATTGTAAGGTGTTTGATATCTAG 4134 0.4032 MMTPPLSNLAKEDDESFLNYLKSLPPIDTNNCGASLNSLDMDSTPTFHSYVISNFLALNEPMRNNPLDTSMPQHFSEDANKIHSHEEADKVIATQDYSPGHHPLISSDEYPNYLLDFLAMPVPNDIYVQDGAMKDSVEGGNYIQEVGQIEANIEVSDCDGENVISEMQSLTLMDRNPIEWKNASNKMCGSTNIMPFQDLTNKQLNPPNLKRKRTCQIDLDTSCLTNENQEETVDFYKRPCSCQNCLNRPINKDKILEARKKIVPKVEDPNKSGCKCYKSNCLKKYCECFKAGDGCSPSCNCRGFIAASSTDDSGIPSQDLAVLLEYNFEGRYDLVRFIKTVQKVGLYVNLRIGPYVCAEWNFGGIPVWLKYVPGISFRTDNEPFKAAMQGFTQKIVQMMKSENLFQSQGGPIILSQIENEYGPESKAMGAAGHAYLNWAAYMAVGLGTGVPWVMCKEIDAPDPVINSCNGFYCDDFSPNKPYKPSMWTESWSGWFTEFGGPIHQRPVQDLAFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYSHLKDLHKVIKRCEHALVSSVPTVTSLGTYQQAHVFSAGTAGCAAFLANYHVQSAATVVFNNKHYDLPPWSISILPDCKTSVFNTAKVRISCRTYYGLSFSSIKSLTSQQLVRIHQLFRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATYFGSAQVFEGHPFIVEAGISIGGKDVKQISPGVWFIGLFNGIGPTRTQSKMIIRGPAYSFAANITVEACTNSMMMGDFCNSPVYPFSCTTSNVNSTLKATTVNETMLENLMTCKSSLKTFCADESVSYIFSFDIINVADEFTIMASDVKFNVTPSNKTSGANDISLMCFVRHGSMPSVASFDYSSDLSKVPLVIHSPLIVESHVLQCPLGNAGPNCTMDIYTLQTFVRRGPTPFESYYLPVSVGASYTSANFPLEPLLSYSSYNGEPGNIWTYLLLDIPRGAAGGNIHVQLSSDVKINYEVYIRFGGLPSLINRDYHYVNKSIKSDTSMFFMLYDSSDDKINFYIMYAREGTWGFGLRYLNTSHDPSKGPTVMSLSLERCPKRCSSHGDCKFSFDASGLTSYSFCSCDRNHGGIDCSIEIVSHQGHIRQSFFLIVSNAAVILPAYWALRQKALAEWVLFTSSGIASGLYHACDVGAWCALNFNVLQFMDFWLSFMAVISTFLYLATIDEVLKRAIHTVVAILTALMAVTNATRSSNVVLVMVIGALGLLIGWVIELSTKYRSLSFSVRFSLDFSQILQVIKRWICNLIGTLLRRYHWPFALAGFSALSLEILSRTLETSENYWFWHSFWHISIYTSSFFFLCSKANIRSNNCKVFDI 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03090 1377 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 272 302 IPR005172 -
Vifa3g03090 1377 Pfam Beta-sandwich domain in beta galactosidase 583 654 IPR041392 -
Vifa3g03090 1377 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 409 421 IPR019801 GO:0004553|GO:0005975
Vifa3g03090 1377 Pfam Protein of unknown function (DUF3522) 1146 1351 IPR021910 GO:0016020
Vifa3g03090 1377 PANTHER FIVE-SPAN TRANSMEMBRANE PROTEIN M83 921 1368 IPR021910 GO:0016020
Vifa3g03090 1377 Gene3D - 691 754 IPR014721 -
Vifa3g03090 1377 PRINTS Glycosyl hydrolase family 35 signature 486 501 IPR001944 GO:0004553|GO:0005975
Vifa3g03090 1377 PRINTS Glycosyl hydrolase family 35 signature 407 422 IPR001944 GO:0004553|GO:0005975
Vifa3g03090 1377 PRINTS Glycosyl hydrolase family 35 signature 350 369 IPR001944 GO:0004553|GO:0005975
Vifa3g03090 1377 PRINTS Glycosyl hydrolase family 35 signature 523 538 IPR001944 GO:0004553|GO:0005975
Vifa3g03090 1377 PRINTS Glycosyl hydrolase family 35 signature 543 559 IPR001944 GO:0004553|GO:0005975
Vifa3g03090 1377 FunFam Beta-galactosidase 318 579 - -
Vifa3g03090 1377 Pfam Glycosyl hydrolases family 35 325 574 IPR031330 -
Vifa3g03090 1377 SUPERFAMILY (Trans)glycosidases 325 579 IPR017853 -
Vifa3g03090 1377 Pfam Topoisomerase VI B subunit, transducer 692 749 IPR015320 GO:0003677|GO:0003918|GO:0006265
Vifa3g03090 1377 Gene3D Glycosidases 324 579 - -
Vifa3g03090 1377 SMART CXC_2 269 306 IPR033467 -
Vifa3g03090 1377 FunFam Beta-galactosidase 528 656 - -
Vifa3g03090 1377 ProSiteProfiles CRC domain profile. 211 312 IPR005172 -
Vifa3g03090 1377 SUPERFAMILY Ribosomal protein S5 domain 2-like 691 744 IPR020568 -
Vifa3g03090 1377 ProSitePatterns EGF-like domain signature 1. 1125 1136 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03090 Vifa-Chr3 886664440 886674543 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03090 320 654 Glycoside Hydrolase AT1G45130 77.910 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa3g03090 Glyco_hydro_35 2.6e-89 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03090 - - gmx:100778959 983.015