Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03088 ATGATGACACCGCCTCTTTCCAACTTAGCAAAAGAGGATGATGAGTCTTTCTTAAACTACCTCAAGAGTCTACCTCCTATAGACACCAACAACTGTGGAGCATCTTTGAATTCACTTGACATGGATTCTACTCCTACATTTCACTCCTACGTCATATCAAACTTTCTCGCCTTAAATGAGCCCATGAGAAATAACCCTTTAGATACATCAATGCCTCAACATTTTTCTGAGGATGCAAATAAAATACATTCACATGAAGAAGCTGATAAAGTTATTGCCACCCAAGATTACTCACCTGGACATCATCCTTTAATCTCAAGTGATGAGTACCCTAACTATCTGCTAGACTTTCTTGCCATGCCAGTACCGAATGATATCTATGTACAAGATGGTGCTATGAAAGATTCAGTTGAGGGTGGAAATTATATTCAAGAAGTAGGTCAGATCGAGGCAAACATTGAAGTTCCAGATTGTGATGGCGAAAACGTTATTAGTGAAATGCAATCTTTAACTTTAATGGATAGAAATCCAATTGAGTGGAAGAATGCTAGTAATAAAATGTGTGGGAGTACTAACATAATGCCATTTCAGGACCTAACAAATAAACAGTTGAATCCTCCAAACTTGAAAAGGAAGAGGACATGTCAGATTGATTTGGATACTTCTTGCTTAACAAATGAAAATCAGGAAGAAACTGTTGATTTCTATAAGAGTATCCCCACAAAAAAGATGAAAATCCACAATTCAGATGCATGCAATAACTGTAAATGTAAAAAATCTCAGTGTTTGAAACTTTATTGTGTGTGCTTTGCTACTGGAGTTTACTGCACAGGACCTTGTTCATGTCAAAACTGCTTGAATAGACCTATTAACAAAGATAAAATCCTGGAAGCTCGCAAGAAGATTGTGCCTAAAGTTGAGGACCCCAACAAAAGCGGATGCAAATGCTATAAATCAAACTGCCTAAAGAAATATTGTGAATGTTTTAAGGCTGGTGATGGTTGCTCCCCGAGTTGTAACTGTCGAGGATGTGAGAATATACATGGTAGAAGGATCGTGTGGTTGGAACAAAATCTCAGCTTGAAGAACTAG 1092 0.3764 MMTPPLSNLAKEDDESFLNYLKSLPPIDTNNCGASLNSLDMDSTPTFHSYVISNFLALNEPMRNNPLDTSMPQHFSEDANKIHSHEEADKVIATQDYSPGHHPLISSDEYPNYLLDFLAMPVPNDIYVQDGAMKDSVEGGNYIQEVGQIEANIEVPDCDGENVISEMQSLTLMDRNPIEWKNASNKMCGSTNIMPFQDLTNKQLNPPNLKRKRTCQIDLDTSCLTNENQEETVDFYKSIPTKKMKIHNSDACNNCKCKKSQCLKLYCVCFATGVYCTGPCSCQNCLNRPINKDKILEARKKIVPKVEDPNKSGCKCYKSNCLKKYCECFKAGDGCSPSCNCRGCENIHGRRIVWLEQNLSLKN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03088 363 SMART CXC_2 250 291 IPR033467 -
Vifa3g03088 363 SMART CXC_2 309 350 IPR033467 -
Vifa3g03088 363 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 253 288 IPR005172 -
Vifa3g03088 363 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 312 346 IPR005172 -
Vifa3g03088 363 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 234 302 IPR044522 GO:0003700
Vifa3g03088 363 ProSiteProfiles CRC domain profile. 251 349 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03088 Vifa-Chr3 886543202 886544789 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03088 232 351 CPP Transcription Factor Family AT3G22760 45.395 6.73e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa3g03088 TCR 9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03088 - K21776 psat:127096180 410.994