Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03084 ATGAAGGCACCGCCACCTCTTCCCAAAGAGAATGAGGCTTTGCATAAATATGTCGGAGCATCTTTGAATTCACTTGCCTTTGATTCTTCTCCTCCTTCATCATTTGATGATGTCTTATCATCCTATCTCACCTTATATGATGAATCCATTGTCCCCATAAGAAATAACCCTTTGGACACATCAATGCTTGGAGTTTTGTATGATGATGCAAATAAAATACATTCACATCAAGAAGCTGATAAAGTAATTCCCACAGAATATTCCTATGTACAAGATGGTTCTAGGAAAGATTCATTTGAGGGAGGAAATCATATTCAGGAAGTAGGTCAGATTGAGGCAAACATTGAAGTTCCAGATTGTGATGGAAAAAACATTACAAGTGAAATGCAATCATTAACTTTAATGGATAGAAATCCAATTGAGAGATGGAATGATGAGGTTGCTCGTATCAGACGCGGTATGCAAGGGCTCGTTCTAGATAGGCTAGGGAATAGGATGATCACTACCACTACAAACATATGTTCCTATACAGCAAAATCTGATGAGCTGAAGAATGCTAGTAATAAAATGTGTGGGAGTACTCACATAATTCCATTTCAGGACCTAACAAATAAACAGTTGAAGCCTCCAAACTTGAAAAGGAAGAGGACGTGTCAGATTGATCTGGATGCTTCTTGCTTAACAAATGAAAATCAGGAGGAAAGTGCTGATTTCTATAAGAGTGTCCTGAAAAAGAAGATGAAATGCCACAAGGAAGAAGGACCATGCAATAACTGCAAATGTATAAAATCAAAATGTTTGAAACTTTATTGTGAGTGCTTTGCTGCTGGAGTTTACTGCACAGGACCTTGCTCGTGTCAAAACTGCTTGAATAAACATATTAATAAAGATAAAGTCCTGGAAGCTCGCGAGAAGATTGTGCCTAAAGTTGAGGACCCCAACAAAAGCAGATGCAACTGCAATAAATCGAGCTGCATGAAGAAATATTGCGAATGTTTTAAGGCTGGTGTTGGTTGCTCTCCAAGTTGTAACTGTTGTGGATGTGAGAATATACATGGTAGAAAGGATAGATTGTGA 1077 0.3825 MKAPPPLPKENEALHKYVGASLNSLAFDSSPPSSFDDVLSSYLTLYDESIVPIRNNPLDTSMLGVLYDDANKIHSHQEADKVIPTEYSYVQDGSRKDSFEGGNHIQEVGQIEANIEVPDCDGKNITSEMQSLTLMDRNPIERWNDEVARIRRGMQGLVLDRLGNRMITTTTNICSYTAKSDELKNASNKMCGSTHIIPFQDLTNKQLKPPNLKRKRTCQIDLDASCLTNENQEESADFYKSVLKKKMKCHKEEGPCNNCKCIKSKCLKLYCECFAAGVYCTGPCSCQNCLNKHINKDKVLEAREKIVPKVEDPNKSRCNCNKSSCMKKYCECFKAGVGCSPSCNCCGCENIHGRKDRL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03084 358 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 257 292 IPR005172 -
Vifa3g03084 358 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 316 350 IPR005172 -
Vifa3g03084 358 SMART CXC_2 313 354 IPR033467 -
Vifa3g03084 358 SMART CXC_2 254 295 IPR033467 -
Vifa3g03084 358 ProSiteProfiles CRC domain profile. 255 353 IPR005172 -
Vifa3g03084 358 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 147 306 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03084 Vifa-Chr3 886054308 886056372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03084 243 356 CPP Transcription Factor Family AT3G22780 49.306 1.03e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa3g03084 TCR 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03084 - - psat:127096180 440.269