Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03077 ATGGAATCCCCTTACAATCTCACACCAATTCTCATATTGTCCATCCTCATCCTATCCTCCATCAACCCCTCACACCAAGCTCTCCCACCTCTCAACCCAAGACTCATCAAAGCCCACACAGCACTCCAAGCATGGAAACACACCTTCACCTCTGACCCTAAAAACTTCACCTCTGACTGGTATGGCCCAAATGTCTGCAACTACACAGGTATCTACTGTGCACCCTCCCCACAAGATCCCTACGTCTACACAGTGGCTGGTATAGATATAAACCATGCAAACATAGCCGGTTCTTTACCGGAAGAACTCGGTCTTTTAACCGACCTAGCTCTCTTCCATGTTAACTCAAACAGCTTCCATGGCTCCCTTCCAAACACCTTCGACTCTCTACAATATCTCCACGAGCTAGACATCAGTAACAACAAATTTTCCGGACCATTCCCGGAAGTTGTTTTATGCATTACCTCATTGAAATTTTTAGACATAAGATTCAACAATTTTCAAGGAAATGTGCCTGAGAAACTCTTTGATCTAAAACTCGATGCAGTTTTTATCAATGACAATAAATTTCAATTCTCTTTGCCTGAGAATTTCGGAAACTCTCCGGTTTCTGTGATTGTTTTCGCGAACAATGACATCAAAGGTTGTATTCCATCGAGTGTGGTGAAAATGAAGGATACTATTAACGAGATTATTATGGTTAACAGTGGAATGAAAGGCTGTTTACCGGACGAAATCGGTGAGTTGGATAAAGTGACGGTGTTTGATGTTAGTTACAATGAGTTTGTTGGTGAGTTGCCGGAGAGCATTGGTGGGATGAAGAGTTTGGAGCAGTTGAATGTGGCGCATAATAGGTTTTCTGGTTTGGTTCCGGAGAGTGTTTGTAGGTTGCCGAGGTTGGAGAATTTTACGTATTCGTTTAACTTTTTCAGTGATGAATCGGAGACTTGTGTTGAGTTAAGAACTAAGGATGATAGGTTGAATTGTATTCCTTTTAGACCGTTGCAAAGGTCGGGTTATGAGTGTCATGTTTTTTATAAACATCCTGTTCATTGCACTGGTGTTGGTTGTTCTTTTACAGTTCCGTCACCTCCACCTCCACCACCTCCTCCGCCTCCACCACCTCCACCTCCTCCACCACCCCCTCCGCCTCCACCTCCTCCGCCTCCACCACCTCCACCTCCTCCACCACCCCCTCCGCCTCCACCACCATCACCACCTCCTCCTGCGGAAATCTACTACCATTATCTATGA 1254 0.4498 MESPYNLTPILILSILILSSINPSHQALPPLNPRLIKAHTALQAWKHTFTSDPKNFTSDWYGPNVCNYTGIYCAPSPQDPYVYTVAGIDINHANIAGSLPEELGLLTDLALFHVNSNSFHGSLPNTFDSLQYLHELDISNNKFSGPFPEVVLCITSLKFLDIRFNNFQGNVPEKLFDLKLDAVFINDNKFQFSLPENFGNSPVSVIVFANNDIKGCIPSSVVKMKDTINEIIMVNSGMKGCLPDEIGELDKVTVFDVSYNEFVGELPESIGGMKSLEQLNVAHNRFSGLVPESVCRLPRLENFTYSFNFFSDESETCVELRTKDDRLNCIPFRPLQRSGYECHVFYKHPVHCTGVGCSFTVPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPAEIYYHYL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03077 417 Pfam Leucine rich repeat N-terminal domain 40 73 IPR013210 -
Vifa3g03077 417 FunFam Leucine-rich repeat extensin-like protein 1 39 200 - -
Vifa3g03077 417 PRINTS Proline rich extensin signature 359 371 - -
Vifa3g03077 417 PRINTS Proline rich extensin signature 371 392 - -
Vifa3g03077 417 PRINTS Proline rich extensin signature 393 409 - -
Vifa3g03077 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 409 - -
Vifa3g03077 417 MobiDBLite consensus disorder prediction 363 407 - -
Vifa3g03077 417 Gene3D Ribonuclease Inhibitor 202 329 IPR032675 -
Vifa3g03077 417 Gene3D Ribonuclease Inhibitor 37 201 IPR032675 -
Vifa3g03077 417 SUPERFAMILY L domain-like 39 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03077 Vifa-Chr3 884531786 884533039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03077 21 357 Leucine-rich Repeat extension Gene Families AT3G22800 66.862 1.17e-163 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03077 - - tpra:123881562 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03077 3 884531786 884533039 Vifa3g03077 3 884531786 884533039 ECH