Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03076 ATGGGAAAAAAAGAAAATCCAACTACTCCAATTTCAAGTTCAAATTCAAGTTCTACAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCGGCTACACCAACAGTTTCTAAGGAGTTGAATAAATCTGAAGTTATTGCTTCGGTGACAGTACAAACTGTTACTGATATTCAGAATATTCAGAGTGAGCAGAGGAATCATGCTATGGCTGTGGCTGTTGCTACTGCGGCTGCAGCTGATGCAGCAGTGGCTGCTGCACAGGCTGCAGCTGTTGTGATCCGGTTGACTTCTGGTTCGAATGAGAGTTCTAGAAGTATTGAAGAGGCTGCTGCTGTTAAAATTCAATGCGTCTATCGATCTCACTTGGCGAGAAAGGCATTGCGTGCTCTTAGAGGATTAGTGAAATTGCAGGCACTGATAAGGGGTCACTTGGTGAGAAAACAGGCTAAGGCAACTCTTAGATGTATGCAGGCTTTGGTGACAGCACAAGCTAGAGCGCGTGCTCAACGGATCCGAATGGTGTCCGAAGGAAAGCCTAATCCAAATCAATCAACTCCTAGAAATGTCATGGAAATGGAAAATGACCTGTTCAGGCAAATATATAATGAAATGGACAGAGGCTTAGAAGACAACATCAAGATTGTGGAAATGGACTTTTGTGAATCAAAAGGTAACTCTACGAGCAGAAGCAGCAGTGTAAATCATCAATATTCCACAAATGGTTCCTATTCCTACTCAAAAGAAGAAAACTACAAAGTATCACCAGCTCCATCAGCTGTAACCGAAATGAGTCCGAAAGCATGCAGTGGCCATTTCGAAGATTGCTTCAGTACAGCACAAAGCAGCCCTCATTACTATTCTGCTATATCGAAAACAGACGATTCAGCTTCAAATCATCCTTTTTCTTTCCCTAGACCGTCTTACGCAGAACCTATGTCCTATGATTACCCTTTGTATCCAAGTTACATGGCTAATACAGAATCATCAAAGGCTAAAGCTAGATCACACAGTGCACCGAAACAAAGGCCGGATTCATTTGAGAGGCAATTGAGCCGACGAAGAGTTTCGGTCGAGGGAAGAAATGTACCTAGGCCAGTGAGGATGCAGAGGTCATCTTCACATGTTGGTGCCACTGCTCAGAACTACCAATATCCATGGTCAGTTAAGCTTGATAGGTCAGCGGTTTCGCTGCAAGACAGCGAGTGTGGCTCGACAAGTACAATGCTGACGAATACTAATTACTGCAGATCTCTTGTTGCATATGATCAAGATGGAGATAGGAACTGA 1284 0.4322 MGKKENPTTPISSSNSSSTKEKKRWSFRRSATPTVSKELNKSEVIASVTVQTVTDIQNIQSEQRNHAMAVAVATAAAADAAVAAAQAAAVVIRLTSGSNESSRSIEEAAAVKIQCVYRSHLARKALRALRGLVKLQALIRGHLVRKQAKATLRCMQALVTAQARARAQRIRMVSEGKPNPNQSTPRNVMEMENDLFRQIYNEMDRGLEDNIKIVEMDFCESKGNSTSRSSSVNHQYSTNGSYSYSKEENYKVSPAPSAVTEMSPKACSGHFEDCFSTAQSSPHYYSAISKTDDSASNHPFSFPRPSYAEPMSYDYPLYPSYMANTESSKAKARSHSAPKQRPDSFERQLSRRRVSVEGRNVPRPVRMQRSSSHVGATAQNYQYPWSVKLDRSAVSLQDSECGSTSTMLTNTNYCRSLVAYDQDGDRN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03076 427 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Vifa3g03076 427 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g03076 427 Pfam Protein of unknown function (DUF4005) 282 359 IPR025064 -
Vifa3g03076 427 MobiDBLite consensus disorder prediction 222 241 - -
Vifa3g03076 427 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g03076 427 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
Vifa3g03076 427 Gene3D - 106 153 - -
Vifa3g03076 427 PANTHER IQ-DOMAIN 5-RELATED 17 357 - -
Vifa3g03076 427 Pfam IQ calmodulin-binding motif 133 149 IPR000048 GO:0005515
Vifa3g03076 427 Pfam IQ calmodulin-binding motif 108 127 IPR000048 GO:0005515
Vifa3g03076 427 MobiDBLite consensus disorder prediction 332 352 - -
Vifa3g03076 427 MobiDBLite consensus disorder prediction 326 352 - -
Vifa3g03076 427 SMART iq_5 105 127 IPR000048 GO:0005515
Vifa3g03076 427 SMART iq_5 128 149 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03076 Vifa-Chr3 883989735 883991662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03076 2 417 IQD Protein Family AT4G14750 44.671 2.08e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03076 - - gmx:100817667 537.724