Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03075 ATGGCTGGTAGATTACCTGGTGTTGGATTGTCACCAAGGAAAAAATCAGAACAACATCACAACAGACATGAAAATTATGCTACCTATAGAGACTCTTACCTAAGAAAATCATTGGATTTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAAATGCTTTCAAAGCCAAACAAAGACTTGAGAAGAAACTTGGCTCCTTCTTTTCTTCTTCCAGGTCAAGTGAAGAAAATCCTAAAGAAAGTAAAAGCAGATTTCAGATGAAAAATGCAGGACTAGGTCGAAAACTACTAGAAAGTGCATGGTTATTACGTGGAAATAGGTTTAAGAAAGAGAGAAATGTTTGTGCTGTGTGCCTAGAAGATTTCCATCAAAATGAAGAGGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAAGACATCCTCATTGTCCTTATTGTAGGACTGTTATTGAGCCAAAGGATTATTAA 501 0.3713 MAGRLPGVGLSPRKKSEQHHNRHENYATYRDSYLRKSLDLDAPWTSMTTTLDENAFKAKQRLEKKLGSFFSSSRSSEENPKESKSRFQMKNAGLGRKLLESAWLLRGNRFKKERNVCAVCLEDFHQNEEVMNLSCSHKYHSACLLPWLERHPHCPYCRTVIEPKDY 166
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03075 166 CDD RING-H2_PA-TM-RING 116 158 - -
Vifa3g03075 166 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g03075 166 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Vifa3g03075 166 SUPERFAMILY RING/U-box 116 164 - -
Vifa3g03075 166 Pfam Ring finger domain 116 158 IPR001841 -
Vifa3g03075 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 165 IPR013083 -
Vifa3g03075 166 SMART ring_2 117 157 IPR001841 -
Vifa3g03075 166 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 58 159 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa3g03075 Vifa-Chr3 883429558 883430563 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03075 21 158 C3H Transcription Factor Family AT3G02340 29.286 2.30e-12 62.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03075 - - gmx:100527548 207.994
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03075 3 883429558 883430563 Vifa3g03075 3 883429558 883430563 ECH