LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g03075	ATGGCTGGTAGATTACCTGGTGTTGGATTGTCACCAAGGAAAAAATCAGAACAACATCACAACAGACATGAAAATTATGCTACCTATAGAGACTCTTACCTAAGAAAATCATTGGATTTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAAATGCTTTCAAAGCCAAACAAAGACTTGAGAAGAAACTTGGCTCCTTCTTTTCTTCTTCCAGGTCAAGTGAAGAAAATCCTAAAGAAAGTAAAAGCAGATTTCAGATGAAAAATGCAGGACTAGGTCGAAAACTACTAGAAAGTGCATGGTTATTACGTGGAAATAGGTTTAAGAAAGAGAGAAATGTTTGTGCTGTGTGCCTAGAAGATTTCCATCAAAATGAAGAGGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAAGACATCCTCATTGTCCTTATTGTAGGACTGTTATTGAGCCAAAGGATTATTAA	501	0.3713	MAGRLPGVGLSPRKKSEQHHNRHENYATYRDSYLRKSLDLDAPWTSMTTTLDENAFKAKQRLEKKLGSFFSSSRSSEENPKESKSRFQMKNAGLGRKLLESAWLLRGNRFKKERNVCAVCLEDFHQNEEVMNLSCSHKYHSACLLPWLERHPHCPYCRTVIEPKDY	166

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g03075	166	CDD	RING-H2_PA-TM-RING	116	158	-	-
	Vifa3g03075	166	MobiDBLite	consensus disorder prediction	1	26	-	-
	Vifa3g03075	166	ProSiteProfiles	Zinc finger RING-type profile.	117	158	IPR001841	-
	Vifa3g03075	166	SUPERFAMILY	RING/U-box	116	164	-	-
	Vifa3g03075	166	Pfam	Ring finger domain	116	158	IPR001841	-
	Vifa3g03075	166	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	101	165	IPR013083	-
	Vifa3g03075	166	SMART	ring_2	117	157	IPR001841	-
	Vifa3g03075	166	PANTHER	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	58	159	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g03075	Vifa-Chr3	883429558	883430563	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g03075	21	158	C3H Transcription Factor Family	AT3G02340	29.286	2.30e-12	62.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g03075	-		-	gmx:100527548	207.994

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa3g03075	3	883429558	883430563	Vifa3g03075	3	883429558	883430563	ECH