Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa3g03075 | ATGGCTGGTAGATTACCTGGTGTTGGATTGTCACCAAGGAAAAAATCAGAACAACATCACAACAGACATGAAAATTATGCTACCTATAGAGACTCTTACCTAAGAAAATCATTGGATTTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAAATGCTTTCAAAGCCAAACAAAGACTTGAGAAGAAACTTGGCTCCTTCTTTTCTTCTTCCAGGTCAAGTGAAGAAAATCCTAAAGAAAGTAAAAGCAGATTTCAGATGAAAAATGCAGGACTAGGTCGAAAACTACTAGAAAGTGCATGGTTATTACGTGGAAATAGGTTTAAGAAAGAGAGAAATGTTTGTGCTGTGTGCCTAGAAGATTTCCATCAAAATGAAGAGGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAAGACATCCTCATTGTCCTTATTGTAGGACTGTTATTGAGCCAAAGGATTATTAA | 501 | 0.3713 | MAGRLPGVGLSPRKKSEQHHNRHENYATYRDSYLRKSLDLDAPWTSMTTTLDENAFKAKQRLEKKLGSFFSSSRSSEENPKESKSRFQMKNAGLGRKLLESAWLLRGNRFKKERNVCAVCLEDFHQNEEVMNLSCSHKYHSACLLPWLERHPHCPYCRTVIEPKDY | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa3g03075 | 166 | CDD | RING-H2_PA-TM-RING | 116 | 158 | - | - | |
Vifa3g03075 | 166 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Vifa3g03075 | 166 | ProSiteProfiles | Zinc finger RING-type profile. | 117 | 158 | IPR001841 | - | |
Vifa3g03075 | 166 | SUPERFAMILY | RING/U-box | 116 | 164 | - | - | |
Vifa3g03075 | 166 | Pfam | Ring finger domain | 116 | 158 | IPR001841 | - | |
Vifa3g03075 | 166 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 165 | IPR013083 | - | |
Vifa3g03075 | 166 | SMART | ring_2 | 117 | 157 | IPR001841 | - | |
Vifa3g03075 | 166 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 58 | 159 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa3g03075 | Vifa-Chr3 | 883429558 | 883430563 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa3g03075 | 21 | 158 | C3H Transcription Factor Family | AT3G02340 | 29.286 | 2.30e-12 | 62.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa3g03075 | - | - | gmx:100527548 | 207.994 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa3g03075 | 3 | 883429558 | 883430563 | Vifa3g03075 | 3 | 883429558 | 883430563 | ECH |