Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03063 ATGAACGCCGGCGGAGCCACCGTCATCCGATCCATCCTCGATAAACCTCTCAACCAGCTCACCGAAGATGACATTTCGCAACTCACCCGCGAAGACTGCCGCAGATTCCTCAAAGATAAAGGGATGCGCAGGCCTTCCTGGAACAAATCTCAGGCGATCCAGCAAGTTATTTCTCTCAAAGCGCTTCTTGAACCTACCGACGATGATTCTCCTGCACCGGTTTCCTCCGCCATACACCGCCATCACCACCACCACCACCACGCTCAACCACCTCAAGGGAATTTGAGTGAAGCTGCTCCGGTGAAGGGTTCGGATCCCGATGAGACCGGTGTTCGGGCTGTTGAGGATATTCAGAAATCGATTTCACCTGTTGCAGATAAACCTAATGAAACAAATGATGCTCCTGCCGGGGGGTGCGTGCCTAGTGGGTCATTTGGACAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTACGATGGAGTCTCACCGGATAAGGCACAGTCAATCATGCAACTTGCTGCAAGTCCGACCCTGTTTCCTCAAGACAGTCCTTTAAATAAAAATGCAGCAGTTTGGGCTTCTTCTTGCAACATACCGATTGATAAAGATGTCCTCTACCCCACTAACACAGCAATCCTTCAAGTTTCTCAAACAGATAAGATGGTGGAATATCCTCTGCAATACAGGGAGAAAGGGAGCACACTTCGAGATGCTGATGTAGAGGGTCAGGCAAGCAGAAAAGTGTCGCTGCAGCGATATCTTGAAAAGCGAAAGGACAGGGGAAGACCGAAGGGAAAGAAACTGACTGGCATAACTTCATCTAACTTTGAGATGTATTTGAACCTTCCAGTGAAGATCCATGCCTCAAATGGGAACTCAAGCCGTAGTAGCACTGACTCTCCACCACAGACTAGACTTCCTCTAGTTTCCAGTGGCTCAGCTGACAACCAGCCGAAAATTGCCCTTCCTATTGATCTGAATGATAAAGATGTTCAAGAATGCTAA 1008 0.4821 MNAGGATVIRSILDKPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQVISLKALLEPTDDDSPAPVSSAIHRHHHHHHHAQPPQGNLSEAAPVKGSDPDETGVRAVEDIQKSISPVADKPNETNDAPAGGCVPSGSFGQMTIFYCGKVNVYDGVSPDKAQSIMQLAASPTLFPQDSPLNKNAAVWASSCNIPIDKDVLYPTNTAILQVSQTDKMVEYPLQYREKGSTLRDADVEGQASRKVSLQRYLEKRKDRGRPKGKKLTGITSSNFEMYLNLPVKIHASNGNSSRSSTDSPPQTRLPLVSSGSADNQPKIALPIDLNDKDVQEC 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03063 335 SMART tify_2 141 176 IPR010399 -
Vifa3g03063 335 Pfam tify domain 147 175 IPR010399 -
Vifa3g03063 335 MobiDBLite consensus disorder prediction 288 335 - -
Vifa3g03063 335 ProSiteProfiles Tify domain profile. 141 176 IPR010399 -
Vifa3g03063 335 MobiDBLite consensus disorder prediction 288 318 - -
Vifa3g03063 335 Pfam Jas motif 244 261 IPR018467 -
Vifa3g03063 335 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 275 IPR040390 -
Vifa3g03063 335 MobiDBLite consensus disorder prediction 65 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03063 Vifa-Chr3 874960439 874965615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03063 5 311 Tify Gene Family AT4G14720 45.122 7.21e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa3g03063 tify 6.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03063 - - gmx:100813937 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03063 3 874960439 874965615 Vifa3g03063 3 874960439 874965615 ECH