Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03062 ATGAACGCCGGCGGAGCCACCGTCATCCGATCCATCCTCGATAAACCTCTCAACCAGCTCACCGAAGATGACATTTCGCAACTCACCCGCGAAGACTGCCGCAGATTCCTCAAAGATAAAGGGATGCGCAGGCCTTCCTGGAACAAATCTCAGGCGATCCAGCAAGTTATTTCTCTCAAAGCGCTTCTTGAACCTACCGACGATGATTCTCCTGCACCGGTTTCCTCCGCCATACACCGCCATCACCACCACCACCACCACGCTCAACCACCTCAAGGGAATTTGAGTGAAGCTGCTCCGGTGAAGGGTTCGGATCCCGATGAGACCGGTGTTCGGGCTGTTGAGGATATTCAGAAATCGATTTCACCTGTTGCAGATAAACCTAATGAAACAAATGATGCTCCTGCCGGGGGGTGCGTGCCTAGTGGGTCATTTGGACAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTACGATGGAGTCTCACCGGATAAGGCACAGTCAATCATGCAACTTGCTGCAAGTCCGACCCTGTTTCCTCAAGACAGTCCTTTAAATAAAAATGCAGCAGTTTGGGCTTCTTCTTGCAACATACCGATTGATAAAGATGTCCTCTACCCCACTAACACAGCAATCCTTCAAGTTTCTCAAACAGATAAGATGGTGGAATATCCTCTGCAATACAGGGAGAAAGGGAGCACACTTCGAGATGCTGAGGGTCAGGCAAGCAGAAAAGTGTCGCTGCAGCGATATCTTGAAAAGCGAAAGGACAGGGGAAGACCGAAGGGAAAGAAACTGACTGGCATAACTTCATCTAACTTTGAGATGTATTTGAACCTTCCAGTGAAGATCCATGCCTCAAATGGGAACTCAAGCCGTAGTAGCACTGACTCTCCACCACAGACTAGACTTCCTCTAGTTTCCAGTGGCTCAGCTGACAACCAGCCGAAAATTGCCCTTCCTATTGATCTGAATGATAAAGATGTTCAAGAATGCTAA 1002 0.483 MNAGGATVIRSILDKPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQVISLKALLEPTDDDSPAPVSSAIHRHHHHHHHAQPPQGNLSEAAPVKGSDPDETGVRAVEDIQKSISPVADKPNETNDAPAGGCVPSGSFGQMTIFYCGKVNVYDGVSPDKAQSIMQLAASPTLFPQDSPLNKNAAVWASSCNIPIDKDVLYPTNTAILQVSQTDKMVEYPLQYREKGSTLRDAEGQASRKVSLQRYLEKRKDRGRPKGKKLTGITSSNFEMYLNLPVKIHASNGNSSRSSTDSPPQTRLPLVSSGSADNQPKIALPIDLNDKDVQEC 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03062 333 SMART tify_2 141 176 IPR010399 -
Vifa3g03062 333 MobiDBLite consensus disorder prediction 286 333 - -
Vifa3g03062 333 ProSiteProfiles Tify domain profile. 141 176 IPR010399 -
Vifa3g03062 333 MobiDBLite consensus disorder prediction 286 316 - -
Vifa3g03062 333 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 276 IPR040390 -
Vifa3g03062 333 Pfam Jas motif 242 259 IPR018467 -
Vifa3g03062 333 Pfam tify domain 147 175 IPR010399 -
Vifa3g03062 333 MobiDBLite consensus disorder prediction 65 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03062 Vifa-Chr3 874960439 874965615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03062 5 309 Tify Gene Family AT4G14720 44.512 1.89e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa3g03062 tify 6.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03062 - - gmx:100813937 449.514