Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03054 ATGAACCCTCATCATGGTGGAGTGAAGCATGAATTTGTGGGAGGAAGTTCTTCCTTTTGTGTGGTTGATGGTCCTCAACCAATGGAAGGACTTCATGAAAATGGTCCTCCACCATTTCTCACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGCACAGGCAACAACAGCTTTGTTGTGTTGGATCCTCAAGCCTTTTCTGTTGGTCTTCTCCCAAGATTCTTCAAACACAACAATTTCTCAAGTTTTGTCAGGCAACTTAACACATATGGATTTAAAAAGGTTGATCCAGATAAATGGGAATTTGCCAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAGAACATTAGAAGGAGAAGAGCAAATAGATCACAAGCAATGCAACAACAAGCTCTAGACCCTTCTTGTGTTGAGGTAGGAAGGTTTGGATTAGACGGAATAGAAGTCGATCGGTTACGGCGTGACAGACAAGTTCTAATGGTTGAGTTGATGAAACTCAGACAACAGCAACAGAATACTATAGCTCACCTTGAAGGTATGGAAGTAAGGGTTAAAAGAAATGAACAGAAACAAAAACAGATGATGAATTTCTTGGCAAGAGCAATGCAAAATCCTAATTTCTTGCAACAGTTGGTTCAAAAGAATGAGTGGAGAAAAGAGTTAGAGGAGATGATTTCTATGAAGAGAAGAAGACCTATTGATCAAGCTGGGCCTAGTAATGTTGAAGTTGGTGATGAGTTAGGATATGATGCTCAAGATTGCTTAGCTTCTGTTAAACTTGAACAACATCAATATTTTGAAGAGGATACTAATCTGATTAATCTAGTTGAAATTACAGATAAAGAGATTGATATTGAAGAATTTTGGCAAGATTTGTTTAATGAAGGTAATATTCAAGATAAAAATGTACTAGATGTTGAAGATGTTGGTTGA 960 0.3677 MNPHHGGVKHEFVGGSSSFCVVDGPQPMEGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVLDPQAFSVGLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQKILLKNIRRRRANRSQAMQQQALDPSCVEVGRFGLDGIEVDRLRRDRQVLMVELMKLRQQQQNTIAHLEGMEVRVKRNEQKQKQMMNFLARAMQNPNFLQQLVQKNEWRKELEEMISMKRRRPIDQAGPSNVEVGDELGYDAQDCLASVKLEQHQYFEEDTNLINLVEITDKEIDIEEFWQDLFNEGNIQDKNVLDVEDVG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03054 319 SMART hsfneu3 35 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g03054 319 Coils Coil 158 178 - -
Vifa3g03054 319 FunFam Heat shock transcription factor 1 32 129 - -
Vifa3g03054 319 Gene3D - 31 129 IPR036388 -
Vifa3g03054 319 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g03054 319 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g03054 319 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g03054 319 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 247 IPR027725 -
Vifa3g03054 319 Pfam HSF-type DNA-binding 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g03054 319 SUPERFAMILY "Winged helix" DNA-binding domain 34 128 IPR036390 -
Vifa3g03054 319 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03054 Vifa-Chr3 874332850 874333900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03054 20 266 HSF AT3G22830 66.667 3.32e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa3g03054 HSF_DNA-bind 8.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03054 K09419 - gmx:100809515 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03054 3 874332850 874333900 Vifa3g03054 3 874332850 874333900 ECH
Vifa3g03054 3 874332850 874333900 Vifa3g03054 3 874332850 874333900 PCT