Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03046 ATGTGTGTTTTTGTTCTTGTAGTCGAGGATTCTGATTCCATGGCCTCTAAAATGGAAAGCGATAGTCCAACAAATACCCCACCATCACCGCCAAAGAATATATACAAGGATCCAGATGATGGGAGACAAAGGTTTTTGCTTGAGCTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAACCGAAATTTTGAGGATGAAGCATTCATTGGGTACTTAAAGTATCTTCAGTATTGGAATCGCCCTGAATATATAAAATTTATCATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAAAATGCAAATTTTCGCAATGCAATGGCACATCCTGTCAATAAGGAATTGACGCATAGGCAGCAGTTCTATTTCTGGAAGAACTATAGAAACAATCGGCTAAAACACATTTTACCAAAACCACTTCCAGAACCTAGTGCTGCACTTCCTGCTTCAACTCAACCCCAGCCACCTGTGTCTGCACTACCACCAGCACCTGCTACGAACGTTGCTGTGACAGCAGCTTCTACTCAAGCTCCTTCTCCAATGCCATATGGTGTCCCTCCTGGCTCTAGTCTTGCAAAAAATGACATGAGGAATCCTACAGTTGATAAAAGGAAAAGAAAGTGA 648 0.4182 MCVFVLVVEDSDSMASKMESDSPTNTPPSPPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRNFEDEAFIGYLKYLQYWNRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPVNKELTHRQQFYFWKNYRNNRLKHILPKPLPEPSAALPASTQPQPPVSALPPAPATNVAVTAASTQAPSPMPYGVPPGSSLAKNDMRNPTVDKRKRK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03046 215 MobiDBLite consensus disorder prediction 151 170 - -
Vifa3g03046 215 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 31 132 IPR038089 -
Vifa3g03046 215 FunFam Mediator of RNA polymerase II transcription subunit 31 31 132 - -
Vifa3g03046 215 Pfam SOH1 43 135 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vifa3g03046 215 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 14 215 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vifa3g03046 215 MobiDBLite consensus disorder prediction 14 35 - -
Vifa3g03046 215 MobiDBLite consensus disorder prediction 151 215 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Vifa3g03046 Med31 3.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03046 K15153 - gmx:100527879 333.569