Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03044 ATGGTAGAAGAAAAAGGGTTTGTGCTTTTGCTCTATGGTGCTGCGGAACACAAGACGAGGTTTTCGATGTTTCATACTACATTGTTGTTTCTCGTGTTGTTGGTTCTTTCTCCATTTGCATTTTCACTCACTGATGAAGGACAAGCATTAATGGCAATGAAGTCTTCATTCAACAACATTGCTGACGTTCTTCTTGACTGGGATGATGTGCATAATGACGACTTTTGTTCATGGCGTGGAGTTTTTTGTGATAATGTCACTCTTACTGTAACAGTGGTATCTCTGAACTTGTCATGCTTGAATCTTGGTGGTGAAATATCTCCAGCAATTGGTGATTTAAGAAACTTGCAATCCATAGACCTGCAAGGGAATAAGCTAACTGGTCAAATCCCTGATGAAATTGGGAACTGTGGTGAACTTGTTCATCTGGATTTATCTGATAATCAGCTCTATGGTGATATACCTTTCTCCATATCAAAGCTGAAGCTACTTGAATTTTTGAATTTGAAGAACAATCAGTTGACTGGTCCTATTCCTTCAACTTTATCACAAATTCCAAATCTAAAGACTATTGATCTTGCTAGAAATAAGTTCATTGGAGAAATACCAAGGCTACTCTATTGGAATGAAGTATTGCAATACCTTGGGTTGCGAGGGAATATGTTGACTGGAATTTTGTCTCCCGACATTTGTCAATTAACTGGTTTATGGTACTTTGATGTCAGAGGCAATAATTTGACTGGTACTATACCTGAGAGCATTGGCAACTGTACAAGTTTTGAAATCTTTGACATATCGTATAATCAGATTACTGGGGAGATTCCATATAACATTGGATTTCTTCAAGTGGCTACTTTGTCGCTTCAAGGAAATAGGTTAACCGGGAAGATACCAGAGGTGATTGGTTTGATGCAAGCTCTTGCAATTTTGGATTTGAGTGAGAATCTGTTGGTGGGACCAATTCCTCCAATATTAGGAAATCTATCTTTCACTGGCAAACTATATCTTCATGGAAACATGCTTACTGGATTGATTCCTCCCGAGCTAGGAAACATGTCTAAACTGAGCTACCTGCAACTGAATGATAATCAACTGGTGGGTGAAATTCCTAACGAGTTCGGGAAGCTTGAGCATCTGTTTGAATTGAATCTTGCAAATAACCGTCTAAATGGATCTATTCCACATAACATAAGCTCCTGCACGGCCTTAAATCAGTTTAATGTGCATGGTAATCAGTTAAGCGGTTCTATTCCATTGAGCTTTCGCAAACTTGAGAGTTTGACTTACTTAAATCTCTCTGCGAACAACTTTAAAGGGATTATACCAGTTGAGTTAGGCCGTATCATAAATCTTGATACACTGGATCTATCTAGCAATAATTTTTCCGGTCATGTTCCAGCATCTGTTGGTTCCCTAGAGCATCTTTTGACCCTCAACCTGAGTCATAACCATCTCGATGGTCCATTGTCTGCTGAATTTGGGAATCTTAGAAGCATACAGATTATTGATATGTCCTTCAACAATCTGTCGGGTAGCATTCCTCCAGAAATTGGACAGCTGCAGAACCTTGCCTCTCTGATTTTGAACAACAATGACCTTCACGGGAAGATTCCGGAACAGCTCACCAATTGTTTCAGTCTTTCTTCCATGAATTTTTCTTATAACAACTTTACAGGAGCAGTTCCATCTAATAAGAACTTCACGCGGTTTCTGGCTGACAGTTTCTTTGGAAACCCTTTATTATGTGGAAATTGGATAGGATCCATATGCCGTCCTTATGTCCCGAAATCAAGAGAAATTTTTTCTAGAGTTGCAGTTGCATGTCTCACTCTTGGTATCATCGTGTTACTGGCTATGGTGATTATTGCTATATATAGATCCATCCAATCAAAGCAGTTGTTGAAAGCATCTAACATGTCCGACCAAGTGCCTCCCAAGCTTGTGGTTCTTCATATGGATTTGGCAATACACACTTTGGATGATATAATGAGAAGCACCGAAAATCTCAGTGAGAAATTTATCATAGGTTATGGTGCCTCTAGTACTGTATACAAGTGTGTGTTGAAAAATTCCCGACCGATTGCAGTCAAGCGATTGTACAATCAGCATCCACACAATTTAAGGGAATTCGAAACGGAACTTGTAACAATAGGCAGCATTAGGCATAGAAATCTTGTTGTTTTGCATGGCTATGCTCTTACTCCTTATGCAAATCTACTTTTTTACGAGTACATGGCAAACGGCTCTCTGTGGGATCTTCTACATGGTCCGCTTAAGGTAAAACTCGATTGGGAAACACGGATGAGGATTGCTGTTGGAGCTGCTGAAGGACTTGCTTATCTTCATCATGATTGCAACCCTCGAATTGTTCACAGGGACATTAAGTCTTCAAATATTTTGCTGGATGAAAACTTTGTGGCTCACCTTTCTGATTTTGGCACTGCAAAATGCATCCCGGCCACAAAAACTCACGCCTCAACTTATGTCCTAGGAACTATAGGCTATATTGATCCTGAATATGCACGAACTTCTAGGCTGAATGAGAAATCGGATGTATATAGCTTTGGCATTGTTCTGCTAGAGCTACTCACTGGGAAGAAGGCAGTGGATAATGATTCCAATTTGCATCAATTGATATTGTCCAAGGCTGACAATAACACTGTAATGGAAGCTGTGGATCCCGAGGTATCCGTTACCTGCGTTGATTTGGCTCATGTCAAGAAGACCTTTCAACTTGCTTTGCTATGCACAAAAAAGAACCCTTCTGAGAGGCCTACCATGCATGAAGTAACCAGGGTGCTTATTTCACTTCTTCCTGCACCTCCAAGTAAAGTCATTGCAGCTATGGGGAAGAGTTTCGACTATGCTCCTTTCGTGGTTGATAAGGGACAGCACCACCGAAAATTGGATGGACTACAACCTCAGTGCGATAACAACTCTTCTAATGCTCAATGGTTTGTTCGTTTCGGGGATGCTATATCCAAGAGCTCTCTCTGA 2997 0.4041 MVEEKGFVLLLYGAAEHKTRFSMFHTTLLFLVLLVLSPFAFSLTDEGQALMAMKSSFNNIADVLLDWDDVHNDDFCSWRGVFCDNVTLTVTVVSLNLSCLNLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCGELVHLDLSDNQLYGDIPFSISKLKLLEFLNLKNNQLTGPIPSTLSQIPNLKTIDLARNKFIGEIPRLLYWNEVLQYLGLRGNMLTGILSPDICQLTGLWYFDVRGNNLTGTIPESIGNCTSFEIFDISYNQITGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENLLVGPIPPILGNLSFTGKLYLHGNMLTGLIPPELGNMSKLSYLQLNDNQLVGEIPNEFGKLEHLFELNLANNRLNGSIPHNISSCTALNQFNVHGNQLSGSIPLSFRKLESLTYLNLSANNFKGIIPVELGRIINLDTLDLSSNNFSGHVPASVGSLEHLLTLNLSHNHLDGPLSAEFGNLRSIQIIDMSFNNLSGSIPPEIGQLQNLASLILNNNDLHGKIPEQLTNCFSLSSMNFSYNNFTGAVPSNKNFTRFLADSFFGNPLLCGNWIGSICRPYVPKSREIFSRVAVACLTLGIIVLLAMVIIAIYRSIQSKQLLKASNMSDQVPPKLVVLHMDLAIHTLDDIMRSTENLSEKFIIGYGASSTVYKCVLKNSRPIAVKRLYNQHPHNLREFETELVTIGSIRHRNLVVLHGYALTPYANLLFYEYMANGSLWDLLHGPLKVKLDWETRMRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFVAHLSDFGTAKCIPATKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLILSKADNNTVMEAVDPEVSVTCVDLAHVKKTFQLALLCTKKNPSERPTMHEVTRVLISLLPAPPSKVIAAMGKSFDYAPFVVDKGQHHRKLDGLQPQCDNNSSNAQWFVRFGDAISKSSL 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03044 998 SMART LRR_typ_2 472 495 IPR003591 -
Vifa3g03044 998 SMART LRR_typ_2 233 257 IPR003591 -
Vifa3g03044 998 SMART LRR_typ_2 113 137 IPR003591 -
Vifa3g03044 998 SMART LRR_typ_2 520 544 IPR003591 -
Vifa3g03044 998 SMART LRR_typ_2 376 400 IPR003591 -
Vifa3g03044 998 SMART LRR_typ_2 352 375 IPR003591 -
Vifa3g03044 998 SMART LRR_typ_2 424 447 IPR003591 -
Vifa3g03044 998 SMART LRR_typ_2 161 185 IPR003591 -
Vifa3g03044 998 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 640 744 - -
Vifa3g03044 998 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515
Vifa3g03044 998 Pfam Leucine rich repeat 333 389 IPR001611 GO:0005515
Vifa3g03044 998 Pfam Leucine rich repeat 450 509 IPR001611 GO:0005515
Vifa3g03044 998 SUPERFAMILY Protein kinase-like (PK-like) 651 934 IPR011009 -
Vifa3g03044 998 Gene3D Transferase(Phosphotransferase) domain 1 745 943 - -
Vifa3g03044 998 SUPERFAMILY L domain-like 327 583 - -
Vifa3g03044 998 Gene3D Ribonuclease Inhibitor 43 210 IPR032675 -
Vifa3g03044 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 320 593 - -
Vifa3g03044 998 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Vifa3g03044 998 Gene3D Ribonuclease Inhibitor 211 285 IPR032675 -
Vifa3g03044 998 Gene3D Ribonuclease Inhibitor 286 592 IPR032675 -
Vifa3g03044 998 PANTHER OS04G0122200 PROTEIN 92 203 - -
Vifa3g03044 998 SMART serkin_6 669 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03044 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 210 319 - -
Vifa3g03044 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 43 209 - -
Vifa3g03044 998 ProSiteProfiles Protein kinase domain profile. 669 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03044 998 Gene3D Phosphorylase Kinase; domain 1 630 744 - -
Vifa3g03044 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Vifa3g03044 998 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Vifa3g03044 998 SUPERFAMILY L domain-like 43 339 - -
Vifa3g03044 998 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 745 944 - -
Vifa3g03044 998 Pfam Protein kinase domain 673 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03044 Vifa-Chr3 873201120 873208057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03044 115 998 Receptor kinase-like Gene Family AT5G07180 75.819 0.0 1343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vifa3g03044 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03044 K20718 - gmx:100811653 1652.11