Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03036 ATGACGACAACCAACGGGGATGAGAATGAGAATGGTTTAGAATTGGTTGAGCCCAAAGGGTCTAGAGAGGATAAGGAAAAGAACAAGAGGAAGAAAAAAGAGAAATTTGTGGAGTCTATGGTGATGGAGAAGAAGGTGGAGGATCATAATGCGGTTTCCAAGTTTAAGATATCGGAGCCGTTGAGAGAGAAGTTGAAGGAAAAGGGAATTGAGTCGTTGTTTCCTATTCAGGCAATGACGTTTGATACCATTCTGCATGGGTTTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTATTGCCAATAATAGAATCTATAACAAACGGTCCAGCAAAAGCATCGATAAAGACTGGCGAGGGGAGGCCACCGAGTGTTCTTGTACTTTTACCTACTAGGGAATTAGCCTGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGCGGCAATGGGATTGACTTCTTGTTGTTTATATGGAGGAGCTTCTTATCAAGCTCAAGAGATTAAGCTTAAGAGAGGCGTGGACATTGTTATCGGCACACCAGGCCGCATAAAGGATCATTTAGAGCGGGGGAAAATTGACCTGAGCCAACTAAAGTTTCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTTTTGAAGATGTTGAACTCATCCTTGGTAAGGTTAAAAATGTAGGTAAAGTTCAGACGCTTCTTTTCAGTGCTACTTTGCCGGATTGGGTTAAGCATATTGCGAAAAAATTTCTTAAGCCAGATAAGGAAACTGCGGATCTTGTTGGAGATACGAATATGAAGGCTAGTACCAGTGTTAGGCATATTATTCTTCCTTGTACTGGTTCTGCCAGGTCACAGCTTATCCCAGACATTATTCTCTTTTACAGCAGCGGAGGTCGAACAATTATATTCACGGAGACAAAGGAATCGGCATCTCAGCTCGCAGAGTTGTTGCCTGGAGCAAAAGCACTCCACGGCGACATACAGCAAGCACAACGTGAGGTTACTTTGTCTGCCTTTAGGTCTGGGAAATTCATGACATTAGTTGCGACTAATGTGGCTGCGCGGGGTTTGGATATTAATGATGTTCAGTTAATTATTCAGTGTGAACCTCCAAGGGATGTTGAAGCGTATATTCATCGTTCCGGGCGCACGGGAAGAGCAGGTAACACTGGAGTTGCTGTCATGCTTTATGATCCTAGGAGGTCGAATATATCTAAAATAGAGAGAGAATCGGGCGTTAAATTTGAACATGTTTCGGCACCTCAGGCTAATGATATTGCCAAAGCTATTGGTGCAGAAGCTGCAGAAATGATAACTCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCCGAGGATCTTTTAAATAACTCTGGTTTATCAGTTGTCGATTTACTTGCAAAGGCTCTTGCTAAGGCTGTTGGTTATACAGAGATCAAGAAAAGATCTCTATTAAATTCTATGGAGAATTATGTTACGTTACTTTTTGAGACCGGGAGACCTATCTTTACCCCAACTTTTGCATACAAAATGTTGAGGAGGTTTTTGCCGGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTATCACTGCAGATGGAAATGGTGTAGTTTTTGATGTACTAGCTGAAGATTTAGATACATATCTTGCTGGTAAGAAAAACGCCTCGGATGTAAGTTTAGAGGTGTTAAAAGCTTTGCCGCGTCTGCAACAGAGAGATCAATCAAGAGGCGGGAGATTTGGAGATGGAAATGGTCGCGGTGGGAGAAGTGGTGGTGGTGGTGGCGGCGGCAGGAATGGTAGATTTTCAAGTGATAGGTTTACCAACGGTGGCGGTGGTAGAGGTCGTGGCAACTGGGGTGGGAAAAGATGGTGA 1902 0.4359 MTTTNGDENENGLELVEPKGSREDKEKNKRKKKEKFVESMVMEKKVEDHNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDTILHGFDLVGRARTGQGKTLAFVLPIIESITNGPAKASIKTGEGRPPSVLVLLPTRELACQVNADFEVYGAAMGLTSCCLYGGASYQAQEIKLKRGVDIVIGTPGRIKDHLERGKIDLSQLKFRVLDEADEMLRMGFFEDVELILGKVKNVGKVQTLLFSATLPDWVKHIAKKFLKPDKETADLVGDTNMKASTSVRHIILPCTGSARSQLIPDIILFYSSGGRTIIFTETKESASQLAELLPGAKALHGDIQQAQREVTLSAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHVSAPQANDIAKAIGAEAAEMITQVSDSVIPAFKSAAEDLLNNSGLSVVDLLAKALAKAVGYTEIKKRSLLNSMENYVTLLFETGRPIFTPTFAYKMLRRFLPEEKVEAVKGLTITADGNGVVFDVLAEDLDTYLAGKKNASDVSLEVLKALPRLQQRDQSRGGRFGDGNGRGGRSGGGGGGGRNGRFSSDRFTNGGGGRGRGNWGGKRW 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03036 633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 81 263 IPR014001 -
Vifa3g03036 633 Pfam DEAD/DEAH box helicase 74 251 IPR011545 GO:0003676|GO:0005524
Vifa3g03036 633 Pfam Helicase conserved C-terminal domain 300 395 IPR001650 -
Vifa3g03036 633 CDD GUCT_RH7_like 491 576 - -
Vifa3g03036 633 MobiDBLite consensus disorder prediction 12 35 - -
Vifa3g03036 633 Gene3D - 16 263 IPR027417 -
Vifa3g03036 633 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 23 462 - -
Vifa3g03036 633 Pfam GUCT (NUC152) domain 484 579 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vifa3g03036 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 407 IPR027417 -
Vifa3g03036 633 Gene3D - 502 573 - -
Vifa3g03036 633 SMART ultradead3 69 281 IPR014001 -
Vifa3g03036 633 Gene3D - 287 501 IPR027417 -
Vifa3g03036 633 MobiDBLite consensus disorder prediction 582 633 - -
Vifa3g03036 633 SMART helicmild6 318 395 IPR001650 -
Vifa3g03036 633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 434 IPR001650 -
Vifa3g03036 633 SUPERFAMILY RNA-binding domain, RBD 488 571 IPR035979 GO:0003676
Vifa3g03036 633 CDD DEADc 61 258 - -
Vifa3g03036 633 FunFam DEAD-box ATP-dependent RNA helicase 7 501 573 - -
Vifa3g03036 633 CDD SF2_C_DEAD 278 404 - -
Vifa3g03036 633 MobiDBLite consensus disorder prediction 1 35 - -
Vifa3g03036 633 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 207 215 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03036 Vifa-Chr3 864458932 864462749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03036 18 401 Eukaryotic Initiation Factors Gene Family AT3G13920 28.645 1.29e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03036 K16911 - gmx:100820207 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03036 3 864458932 864462749 Vifa3g03036 3 864458932 864462749 ECH