Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa3g03036 | ATGACGACAACCAACGGGGATGAGAATGAGAATGGTTTAGAATTGGTTGAGCCCAAAGGGTCTAGAGAGGATAAGGAAAAGAACAAGAGGAAGAAAAAAGAGAAATTTGTGGAGTCTATGGTGATGGAGAAGAAGGTGGAGGATCATAATGCGGTTTCCAAGTTTAAGATATCGGAGCCGTTGAGAGAGAAGTTGAAGGAAAAGGGAATTGAGTCGTTGTTTCCTATTCAGGCAATGACGTTTGATACCATTCTGCATGGGTTTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTATTGCCAATAATAGAATCTATAACAAACGGTCCAGCAAAAGCATCGATAAAGACTGGCGAGGGGAGGCCACCGAGTGTTCTTGTACTTTTACCTACTAGGGAATTAGCCTGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGCGGCAATGGGATTGACTTCTTGTTGTTTATATGGAGGAGCTTCTTATCAAGCTCAAGAGATTAAGCTTAAGAGAGGCGTGGACATTGTTATCGGCACACCAGGCCGCATAAAGGATCATTTAGAGCGGGGGAAAATTGACCTGAGCCAACTAAAGTTTCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTTTTGAAGATGTTGAACTCATCCTTGGTAAGGTTAAAAATGTAGGTAAAGTTCAGACGCTTCTTTTCAGTGCTACTTTGCCGGATTGGGTTAAGCATATTGCGAAAAAATTTCTTAAGCCAGATAAGGAAACTGCGGATCTTGTTGGAGATACGAATATGAAGGCTAGTACCAGTGTTAGGCATATTATTCTTCCTTGTACTGGTTCTGCCAGGTCACAGCTTATCCCAGACATTATTCTCTTTTACAGCAGCGGAGGTCGAACAATTATATTCACGGAGACAAAGGAATCGGCATCTCAGCTCGCAGAGTTGTTGCCTGGAGCAAAAGCACTCCACGGCGACATACAGCAAGCACAACGTGAGGTTACTTTGTCTGCCTTTAGGTCTGGGAAATTCATGACATTAGTTGCGACTAATGTGGCTGCGCGGGGTTTGGATATTAATGATGTTCAGTTAATTATTCAGTGTGAACCTCCAAGGGATGTTGAAGCGTATATTCATCGTTCCGGGCGCACGGGAAGAGCAGGTAACACTGGAGTTGCTGTCATGCTTTATGATCCTAGGAGGTCGAATATATCTAAAATAGAGAGAGAATCGGGCGTTAAATTTGAACATGTTTCGGCACCTCAGGCTAATGATATTGCCAAAGCTATTGGTGCAGAAGCTGCAGAAATGATAACTCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCCGAGGATCTTTTAAATAACTCTGGTTTATCAGTTGTCGATTTACTTGCAAAGGCTCTTGCTAAGGCTGTTGGTTATACAGAGATCAAGAAAAGATCTCTATTAAATTCTATGGAGAATTATGTTACGTTACTTTTTGAGACCGGGAGACCTATCTTTACCCCAACTTTTGCATACAAAATGTTGAGGAGGTTTTTGCCGGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTATCACTGCAGATGGAAATGGTGTAGTTTTTGATGTACTAGCTGAAGATTTAGATACATATCTTGCTGGTAAGAAAAACGCCTCGGATGTAAGTTTAGAGGTGTTAAAAGCTTTGCCGCGTCTGCAACAGAGAGATCAATCAAGAGGCGGGAGATTTGGAGATGGAAATGGTCGCGGTGGGAGAAGTGGTGGTGGTGGTGGCGGCGGCAGGAATGGTAGATTTTCAAGTGATAGGTTTACCAACGGTGGCGGTGGTAGAGGTCGTGGCAACTGGGGTGGGAAAAGATGGTGA | 1902 | 0.4359 | MTTTNGDENENGLELVEPKGSREDKEKNKRKKKEKFVESMVMEKKVEDHNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDTILHGFDLVGRARTGQGKTLAFVLPIIESITNGPAKASIKTGEGRPPSVLVLLPTRELACQVNADFEVYGAAMGLTSCCLYGGASYQAQEIKLKRGVDIVIGTPGRIKDHLERGKIDLSQLKFRVLDEADEMLRMGFFEDVELILGKVKNVGKVQTLLFSATLPDWVKHIAKKFLKPDKETADLVGDTNMKASTSVRHIILPCTGSARSQLIPDIILFYSSGGRTIIFTETKESASQLAELLPGAKALHGDIQQAQREVTLSAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHVSAPQANDIAKAIGAEAAEMITQVSDSVIPAFKSAAEDLLNNSGLSVVDLLAKALAKAVGYTEIKKRSLLNSMENYVTLLFETGRPIFTPTFAYKMLRRFLPEEKVEAVKGLTITADGNGVVFDVLAEDLDTYLAGKKNASDVSLEVLKALPRLQQRDQSRGGRFGDGNGRGGRSGGGGGGGRNGRFSSDRFTNGGGGRGRGNWGGKRW | 633 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa3g03036 | 633 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 81 | 263 | IPR014001 | - | |
Vifa3g03036 | 633 | Pfam | DEAD/DEAH box helicase | 74 | 251 | IPR011545 | GO:0003676|GO:0005524 | |
Vifa3g03036 | 633 | Pfam | Helicase conserved C-terminal domain | 300 | 395 | IPR001650 | - | |
Vifa3g03036 | 633 | CDD | GUCT_RH7_like | 491 | 576 | - | - | |
Vifa3g03036 | 633 | MobiDBLite | consensus disorder prediction | 12 | 35 | - | - | |
Vifa3g03036 | 633 | Gene3D | - | 16 | 263 | IPR027417 | - | |
Vifa3g03036 | 633 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 23 | 462 | - | - | |
Vifa3g03036 | 633 | Pfam | GUCT (NUC152) domain | 484 | 579 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
Vifa3g03036 | 633 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 128 | 407 | IPR027417 | - | |
Vifa3g03036 | 633 | Gene3D | - | 502 | 573 | - | - | |
Vifa3g03036 | 633 | SMART | ultradead3 | 69 | 281 | IPR014001 | - | |
Vifa3g03036 | 633 | Gene3D | - | 287 | 501 | IPR027417 | - | |
Vifa3g03036 | 633 | MobiDBLite | consensus disorder prediction | 582 | 633 | - | - | |
Vifa3g03036 | 633 | SMART | helicmild6 | 318 | 395 | IPR001650 | - | |
Vifa3g03036 | 633 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 293 | 434 | IPR001650 | - | |
Vifa3g03036 | 633 | SUPERFAMILY | RNA-binding domain, RBD | 488 | 571 | IPR035979 | GO:0003676 | |
Vifa3g03036 | 633 | CDD | DEADc | 61 | 258 | - | - | |
Vifa3g03036 | 633 | FunFam | DEAD-box ATP-dependent RNA helicase 7 | 501 | 573 | - | - | |
Vifa3g03036 | 633 | CDD | SF2_C_DEAD | 278 | 404 | - | - | |
Vifa3g03036 | 633 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Vifa3g03036 | 633 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 207 | 215 | IPR000629 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa3g03036 | Vifa-Chr3 | 864458932 | 864462749 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa3g03036 | 18 | 401 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 28.645 | 1.29e-39 | 149 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa3g03036 | K16911 | - | gmx:100820207 | 905.205 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa3g03036 | 3 | 864458932 | 864462749 | Vifa3g03036 | 3 | 864458932 | 864462749 | ECH |