Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03030 ATGCCGTCCACTTCATCACCTCCACCACATCCTCCGCCCCAAACAAATAACAAAGAGACTCCCACCGTCGTCACTGGTTGCTCTTTCCTCTTCGCGCTTCTTCACTGCCTCCGCAACGAGAAACGAACAACTCCATCCTCCGACTCAGACTCCAACCCTCCTCATCCCTTCTCCTACTCCCTCCTCCGCCGCGCAACAAACTCGTTCTCCAATATTCTCGGTCATGGCGGATTTGGTCCTGTCTATTCCGGCACCCTCCCTTCCTCCGGTAAACCAATCGCCGTCAAGCTTATGGACTCTAGTACATCTTCCCTCGGCTGTCAAGGCGAACGTGAATATCACAACGAACTCTTCTTCGCCGCCAGGCTCCATTCCGACCTCCTCGTCCCCGCAATCGGTTTCTCATCCGACCGCAAACGCCGCAAATTCCTTCTCGTTTATGATCTCATGAAAAACGGTAATCTCCATGACGCGCTTTTCCGTAGTAAATGCCATGAATTAACGCACTGGAAAACGCGGTTTTCCATCATTCTCGACGTAGCGAAAGGAATTCAATATCTTCATTCTTGTGATCCCCCAATCATTCATGGTGATATTAAACCTAGTAATATTCTTCTTGATCATTCCTTTTCAGCTAAAATCGCTGATTTCGGTCTCGCGAGGTTGAAAACCGTTTCCCCTTTCGAATTCAGAAAAGATGAACTCGAGAGTGATGAGACGGAAATTGAGAGTGTTAATACTAGCTTAGAGGAATATGAAACAGACATGGTTGGTGTTGGTGGTGGCAGTGTGAAGGATTATGTAATGAATTGGATTGGTAAAGAAGTGAAAGAGGAAAGGTCGAAAAACGGTGAATTGTTGGTGGGTGGAAGTGGAAAGGTAGAGAAAAGCAAGAGCAAGAAGAAAATGAAGTGGTGGGAATCAATGGAAGAGGGGAATGGAAAGGGTGGTTTGAAGAAGGAAAAAAGAAGACCAGCAAGAGAATGGTGGAAGGAGGAGTTTTCTAAAGAACTCGCCAACAAGAACAAGAGGAAAGAGAGCGGAAAAAATGGTGATAGATGGTGGAAATGGGAGAGAGATCGCAACGATGTTGATGATGGCAATGTGAAGAAGAAAATGAGTAGTAAAAGCCGTAGCAGAAAGGAACGTGGTAGCGATGATTCATGGTTGAGTGGTGAGTTAAAGAGAGTCAATATGAATAGCTATGATTCATGTAATAGTGGAGAAATTTACAAGAGTGGTGAAATCAGCAGTACAACAAGTACTCGAGGAACTGTTTTCTACGTCGCGCCTGAAAACGGTTATAGTGGTGGTGATATAACAGAGAAATGTGATGTTTATAGTTTTGGGGTGTTGTTGCTTGTTATTGTTTCTGGGAGGAGGCCTCTTGAGGTGAATGATGGTGTACATGTTTCTGAGTTTAAGAGAGCCAATTTGGTGTCTTGGGCTAGACATTGTGGAAGGAATGGGAAACTACTTGAACTTATTGATCCTTGTGTTGAGTTGATGTTAGGGGATGATAGAGACCAGGCTCTTCTATGCATCAGAGTTGCATTGGTTTGTTTGATGAAATCGCCTAATCGTCGTCCTTCGATGAAACAAATTGTGGGGATGCTTAGTGGGGAGTTGGAACCACCTCGATTGTCACATGAGTGCTCGCAAACTCGATTCCAATTCAAGAATAAAAAAGAAAATTTGTGA 1701 0.4462 MPSTSSPPPHPPPQTNNKETPTVVTGCSFLFALLHCLRNEKRTTPSSDSDSNPPHPFSYSLLRRATNSFSNILGHGGFGPVYSGTLPSSGKPIAVKLMDSSTSSLGCQGEREYHNELFFAARLHSDLLVPAIGFSSDRKRRKFLLVYDLMKNGNLHDALFRSKCHELTHWKTRFSIILDVAKGIQYLHSCDPPIIHGDIKPSNILLDHSFSAKIADFGLARLKTVSPFEFRKDELESDETEIESVNTSLEEYETDMVGVGGGSVKDYVMNWIGKEVKEERSKNGELLVGGSGKVEKSKSKKKMKWWESMEEGNGKGGLKKEKRRPAREWWKEEFSKELANKNKRKESGKNGDRWWKWERDRNDVDDGNVKKKMSSKSRSRKERGSDDSWLSGELKRVNMNSYDSCNSGEIYKSGEISSTTSTRGTVFYVAPENGYSGGDITEKCDVYSFGVLLLVIVSGRRPLEVNDGVHVSEFKRANLVSWARHCGRNGKLLELIDPCVELMLGDDRDQALLCIRVALVCLMKSPNRRPSMKQIVGMLSGELEPPRLSHECSQTRFQFKNKKENL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03030 566 PANTHER OS07G0586332 PROTEIN 260 563 IPR044576 -
Vifa3g03030 566 Gene3D Transferase(Phosphotransferase) domain 1 150 248 - -
Vifa3g03030 566 Gene3D Transferase(Phosphotransferase) domain 1 394 559 - -
Vifa3g03030 566 SMART serkin_6 67 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03030 566 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g03030 566 MobiDBLite consensus disorder prediction 1 16 - -
Vifa3g03030 566 ProSiteProfiles Protein kinase domain profile. 67 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03030 566 MobiDBLite consensus disorder prediction 365 388 - -
Vifa3g03030 566 FunFam Os07g0541700 protein 150 230 - -
Vifa3g03030 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vifa3g03030 566 Gene3D Phosphorylase Kinase; domain 1 55 149 - -
Vifa3g03030 566 SUPERFAMILY Protein kinase-like (PK-like) 51 547 IPR011009 -
Vifa3g03030 566 Pfam Protein kinase domain 418 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03030 566 Pfam Protein kinase domain 71 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03030 566 Coils Coil 235 255 - -
Vifa3g03030 566 MobiDBLite consensus disorder prediction 294 324 - -
Vifa3g03030 566 MobiDBLite consensus disorder prediction 283 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03030 Vifa-Chr3 863151861 863153561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03030 419 539 Receptor kinase-like Gene Family AT3G58690 32.540 9.97e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vifa3g03030 Pkinase 7.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03030 - - psat:127097028 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04060 1 623913726 623915744 Vifa3g03030 3 863151861 863153561 PCT