Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03029 ATGGCGGAAGATCAGAAAGAGCATAAAATATCAACTACTTTGGACAGTGATGAGAAGAAGATCATTCGTAGGGAAGTTGAAAAGCAAAGGAGGATGCAAATGTCTATTTTGTGTTCATCACTTCGTTCTTCACTTCCTATTCACCTCATCAAGGGAAAGCGTTCAGTATCAGATCACATAGGCGAAGCTGCAAATTATGTTCAAATTTTGAAGGAGAAGGTTAAAGAACTCGAAATAAAGAGGGATAAGCTCAAAGAAATGATTAGCTCTAGTATGGTTGAAACTGGAAATGAGTTACCTGCAGATCCTTCAAGTTTAGTGAAGTGTGTCAACATTAATCTAATTCCAGATGGGGTGGAAATTGTTATATGTAGTGGTTTCGAGGATTGCCGTATGCGTTTATCGGATTTAATGAAAATAATAGTACTTGAAGAAGGATGTGATGTTGTTCACTGTGTTACCAACCAAGTCAATGGAAAGATATTTCATACTATTAAGTCAGAGGTGGAAGACTTGACACACTTTGATCTTGGTAGGCTGCAAAACAAACTGGTGCATGCAATCTTATTGCCAAGGTAG 579 0.3782 MAEDQKEHKISTTLDSDEKKIIRREVEKQRRMQMSILCSSLRSSLPIHLIKGKRSVSDHIGEAANYVQILKEKVKELEIKRDKLKEMISSSMVETGNELPADPSSLVKCVNINLIPDGVEIVICSGFEDCRMRLSDLMKIIVLEEGCDVVHCVTNQVNGKIFHTIKSEVEDLTHFDLGRLQNKLVHAILLPR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03029 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 70 IPR011598 GO:0046983
Vifa3g03029 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 185 - -
Vifa3g03029 192 Gene3D - 10 96 IPR036638 GO:0046983
Vifa3g03029 192 Coils Coil 60 94 - -
Vifa3g03029 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 90 IPR036638 GO:0046983
Vifa3g03029 192 CDD bHLH_AtORG2_like 19 89 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03029 13 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 33.708 6.84e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03029 - - ccaj:109790384 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03029 3 862877811 862878633 Vifa3g03029 3 862877811 862878633 ECH