Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03028 ATGTTTCCTTTACAACGATGCAATGAACTGGCGACACCCTTATCTAATAGTCTCAACCACCACCCACAAAATCACAATATCTCCGAAGATCTGATTCTTGATGATTGTGATTCTCTTGTTTTTGATTTTTCTAATAAAAAATTGTGTAGCAGCCGGTCACCAAAGAAATTATTTTATACTCCAGCAGACCATACTACAAACCATGGTAGTAATCATAATTCTATCAAAGATAATAAGAAGAAAATGATTCATAAGGAGGTTGAGAAGCACAGGAGACAAGAAATGGCTACCCTTCATGATTCTCTTAGATCCCTTCTCCCTCTTGAATTCATCAAGGGAAAACGTTCTATATCTGATCAAATGAATACGGGAGTGAATTATATAAACCACTTGAAGAAGAATATAAAAGAACTAACTGAAAAAAGGGATGAACTAAAAAAACTGTATAATCTTCCAAGCCTCAAAAGCCATGCATCATGTAGTTTCAGTATCCACAAGAATAATACTACTGTGGGAATTGAAATCACCACTAGAGAAGAAGGGGTACCACTATCTAAGTTGCTGGAACAACTTCAGAAAGAGGGACTTGATGTTGTTAGCTGCTTTTCAACTCAAGTCAATGGAAGATTACTCCATAGTATGCAGTGTGAGGTTATTGATTCCAAGAGTGTAGTGGATCTATCTGAGCTAAGAAGGAAATTTTCCAAAATGAATCCATCATTTAGTTGTTGTTCTGGTTAA 741 0.359 MFPLQRCNELATPLSNSLNHHPQNHNISEDLILDDCDSLVFDFSNKKLCSSRSPKKLFYTPADHTTNHGSNHNSIKDNKKKMIHKEVEKHRRQEMATLHDSLRSLLPLEFIKGKRSISDQMNTGVNYINHLKKNIKELTEKRDELKKLYNLPSLKSHASCSFSIHKNNTTVGIEITTREEGVPLSKLLEQLQKEGLDVVSCFSTQVNGRLLHSMQCEVIDSKSVVDLSELRRKFSKMNPSFSCCSG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03028 246 Gene3D - 70 158 IPR036638 GO:0046983
Vifa3g03028 246 CDD bHLH_AtORG2_like 80 148 - -
Vifa3g03028 246 FunFam Transcription factor bHLH126 71 159 - -
Vifa3g03028 246 Pfam Helix-loop-helix DNA-binding domain 80 132 IPR011598 GO:0046983
Vifa3g03028 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 131 IPR011598 GO:0046983
Vifa3g03028 246 Coils Coil 128 148 - -
Vifa3g03028 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 150 IPR036638 GO:0046983
Vifa3g03028 246 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 69 236 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03028 76 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25400 45.946 5.13e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g03028 HLH 6.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03028 - - gmx:100775836 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03028 3 862773110 862774074 Vifa3g03028 3 862773110 862774074 ECH