Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03027 ATGTCCTTGAAATGTTTATGTTGTTTTCTCTCTAATGAAGAGCAAAGTCCAAGACGGAATGTTGATGAGAAGAAGAATAGTAGGGATTATCCATGGGAAAGATACACTTTGAAGGAGTTGCTTCGTGCAACAAATAACTTTCATCAAGATAACAAAATTGGAGAAGGTGGATTTGGAAGTGTTTATTGGGGTCAAACAAATAAAGGCGTCGAGATTGCTGTGAAGAGGTTGAAGACAATGACTGCCAAAGCGGAGATGGAATTTGCAGTTGAAGTGGAAGTACTTGGAAGGGTGAGGCACAGAAATTTGTTAGGGTTGAGAGGATTCTATGCAGGAGGAGATGAAAGGTTAATCGTGTATGATTACATGCCTAATCATAGCTTACTCACTCATTTACATGGTCAACTTGCCTCTGATTGTTTACTAGATTGGTCTAGAAGAATGAACATAACAATTGGTGCAGCTGAAGGTTTAGCGTACTTACACCATGAGGCAAATCCTCACATAATCCATAGAGACATAAAGGCAAGCAATGTTCTATTAGACACAGAATTTCAAGCCAAAGTAGCTGATTTTGGTTTTGCAAAACTAATACCAGAAGGTGTAAGCCATCTCACAACAAGAGTTAAAGGCACACTAGGCTATTTAGCACCAGAATATGCTATGTGGGGGAAAGTTTCCGAAAGTTGCGATGTTTATAGTTTTGGAATCTTGCTTTTGGAAATCATAAGTGCGAAAAAACCAATTGAGAAACTACCTGGTGGAATAAAAAGGGACATTGTTCAATGGGTCACACCCTATGTACAAAAGGGTGTTTTTAAGCATATTGCTGACCCAAAATTGAAAGGAAATTTTGATTTAGAGCAGTTGAAATCTGTGATTATGATAGCTGTTATGTGCACTGATAGTAGTCCAGATAAAAGGCCTAGTATGATAGAGGTTGTGGAATGGCTTAAAGATGGTGTTTTGAAGAGGAAAAAAGATATTACAAATTCGAGTAGTGGCAATAATAAAGGTGATGGTGGTGAAGAAAATGATGAAAACTATGAAGAGTTTGTGACTATGCAGTCTAATAATTTGAAAATACTAAGTGATAATGATAGGCGCAAAATGAGATGA 1119 0.3744 MSLKCLCCFLSNEEQSPRRNVDEKKNSRDYPWERYTLKELLRATNNFHQDNKIGEGGFGSVYWGQTNKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHRNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLASDCLLDWSRRMNITIGAAEGLAYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGIKRDIVQWVTPYVQKGVFKHIADPKLKGNFDLEQLKSVIMIAVMCTDSSPDKRPSMIEVVEWLKDGVLKRKKDITNSSSGNNKGDGGEENDENYEEFVTMQSNNLKILSDNDRRKMR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03027 372 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03027 372 PANTHER OS01G0253100 PROTEIN 20 320 - -
Vifa3g03027 372 Pfam Protein kinase domain 47 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03027 372 FunFam PTI1-like tyrosine-protein kinase At3g15890 123 334 - -
Vifa3g03027 372 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Vifa3g03027 372 SUPERFAMILY Protein kinase-like (PK-like) 28 323 IPR011009 -
Vifa3g03027 372 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vifa3g03027 372 MobiDBLite consensus disorder prediction 328 348 - -
Vifa3g03027 372 FunFam PTI1-like tyrosine-protein kinase At3g15890 19 122 - -
Vifa3g03027 372 Gene3D Phosphorylase Kinase; domain 1 10 122 - -
Vifa3g03027 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vifa3g03027 372 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03027 Vifa-Chr3 862149651 862154832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03027 33 338 Receptor kinase-like Gene Family AT1G60800 43.831 3.21e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vifa3g03027 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03027 - - gmx:100817283 599.356