Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03009 ATGGGAAGAGGGAAGGTTGTTCTTGAGAGAATCCAGAACAAGATCAATCGACAAGTTACATTCTCAAAGAGAAGAAGTGGTTTGCTCAAGAAAGCCTTCGAACTTTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCAGGCCTTGGCAAGCTTTTTCAATACAGTTCCACTGACTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGTGACTTGGAAGAACATGAGTCACAGGGCTTATACGAGGAGCTTTTGATGTTAAGAGTTAAGCATGAATCTCTTGCCCAGACACAAAGGAATTTTTTGGGAGAAGAAATCAGTGCACTAAGCATAAAAGATTTGCAGAATATAGAAAAACAACTAGAGAGAACGCTTGCACAAGCTAGAAAGCACCAAATGCAGAAACTGATGGCTCGAGTTAATGAATTACGCCAAGAGGTGCACAATGTGGAGGAGGTTAACAAACAATTAGAATCCAAGGAAAGAGGTTTAAGTTCCAATATTTGTGACAATTCTACTGATTTATGCATCTCCAACAACAATATCATTACCAATTTGCGTGATGCACAGGTCAATGAGTTTCAATATGGTCAATTTCGGCACCAGCAAACTGCTTCAAAAGGACAAACAACAGATACAAGGATTGGCAGAGGCCAAAGCAGCCGCAACAAGAACAATTGA 714 0.3992 MGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSGLGKLFQYSSTDLNKIIEKYRQCCFNNMSENGDLEEHESQGLYEELLMLRVKHESLAQTQRNFLGEEISALSIKDLQNIEKQLERTLAQARKHQMQKLMARVNELRQEVHNVEEVNKQLESKERGLSSNICDNSTDLCISNNNIITNLRDAQVNEFQYGQFRHQQTASKGQTTDTRIGRGQSSRNKNN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03009 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa3g03009 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa3g03009 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa3g03009 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa3g03009 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa3g03009 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Vifa3g03009 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa3g03009 237 Coils Coil 122 171 - -
Vifa3g03009 237 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa3g03009 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa3g03009 237 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Vifa3g03009 237 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa3g03009 237 MobiDBLite consensus disorder prediction 211 237 - -
Vifa3g03009 237 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vifa3g03009 237 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vifa3g03009 237 FunFam MADS-box transcription factor MADS-MC 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03009 Vifa-Chr3 856324092 856325779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03009 1 169 MADS-box Gene Family AT3G61120 50.888 2.49e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa3g03009 K-box 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03009 K09264 - gmx:100802197 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03009 3 856324092 856325779 Vifa3g03009 3 856324092 856325779 ECH
Vifa3g03009 3 856324092 856325779 Vifa1g04113 1 633539528 633549112 PCT