Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03008 ATGGGAAGAGGGAAGGTTGTTCTTGAGAGAATCCAGAACAAGATCAATCGACAAGTTACATTCTCAAAGAGAAGAAGTGGTTTGCTCAAGAAAGCCTTCGAACTTTCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCAGGCCTTGGCAAGCTTTTTCAATACAGTTCCACTGACTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGTGACTTGGAAGAACATGAGTCACAGGGCTTATACGAGGAGCTTTTGATGTTAAGAGTTAAGCATGAATCTCTTGCCCAGACACAAAGGAATTTTTTGGGAGAAGAAATCAGTGCACTAAGCATAAAAGATTTGCAGAATATAGAAAAACAACTAGAGAGAACGCTTGCACAAGCTAGAAAGCACCAAATGCAGAAACTGATGGCTCGAGTTAATGAATTACGCCAAGAGGTGCACAATGTGGAGGAGGTTAACAAACAATTAGAATCCAAGTCAATTTCGGCACCAGCAAACTGCTTCAAAAGGACAAACAACAGATACAAGGATTGGCAGAGGCCAAAGCAGCCGCAACAAGAACAATTGATGGATGAATATTTGAATTTTCATTTACCTAAGCTAGTCAGGTAA 648 0.4012 MGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSGLGKLFQYSSTDLNKIIEKYRQCCFNNMSENGDLEEHESQGLYEELLMLRVKHESLAQTQRNFLGEEISALSIKDLQNIEKQLERTLAQARKHQMQKLMARVNELRQEVHNVEEVNKQLESKSISAPANCFKRTNNRYKDWQRPKQPQQEQLMDEYLNFHLPKLVR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03008 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa3g03008 215 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa3g03008 215 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa3g03008 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa3g03008 215 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vifa3g03008 215 Coils Coil 122 171 - -
Vifa3g03008 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Vifa3g03008 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa3g03008 215 FunFam MADS-box transcription factor MADS-MC 13 88 - -
Vifa3g03008 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa3g03008 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa3g03008 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa3g03008 215 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vifa3g03008 215 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Vifa3g03008 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03008 Vifa-Chr3 856323916 856325779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03008 1 168 MADS-box Gene Family AT3G61120 51.190 6.93e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa3g03008 K-box 1.1e-17 No_clan