Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03004 ATGGGTAAAGATTGGTATTGGGGTGCCAGAAAATCCTCCAAGAAAACAACACCTCAAACAGATATCCCTTCTGGTTGCATGTGTGCACTTTTTCAAACCTTTGATTTTCATCCCTTTCACTTTTCCATTAACCAACCACAACAACATCACTCTCCCATTAACTCCATCTCCAAAGAACCTGAAGCTCCAAGGAATAGCTTGGAATCACAAGATGAACAGAATTTCAAAATCCCAAAGAACATAATAACAAGAGGAGGGAGTTTCAATGATCTTTCCTCTGACGTTTCATCTCCCGGAACAAAGACACCAACTTTGGTAGCAAGACTAATGGGTCTTGATCTTCTTCCTGATGCAAACTCACCTTCTTCCTCTTCCTCTTCATCTCTCTCAACTCCAAGCAGACAAAGCCATTACCATACTAGACCAAAACCAGACAAGATCAAAATAATGAAACACAGACACAGCACAGACAGTGTCATCATGCGGTCTTTGCCTGAAACTCCAAGGTTGTCCTCAGAAAAAACATCATCATTTGTTCAACATAGACTCTCTCTACAAATCAACAAAGAAAATATGATTCACGGTGAAGATTTAGACACTCCTCCTCGGTTTTCATTCTCAAAGATCAGAAAACATGTTAAGGAAAGTGTTGGTGGAAGAAAAGTTGGCAAAGACATCACCAACAACACAATCAAAATTTCTAATGAACATGAACATGAACAAGAACAAGAACAAGAGAAAGCGCTGAAACCGCTAGAAGAATCAAAACAAGGAAAACATTCAAACACATCATCTCACTCCCCAAGACTCAGCAGATTCAATGATAACAACGTCAACAACAACCACAGACATTCTCCAACTCTCATAGACCAAAACACACATCAAGTATTAAAACAATCATCACGACCACCTTTGGTCAACATTGAAGCACGGGTTTCAAGAGATTCAACAAAGACTAAAACTCAAGCAATGTCAGAACAGAAAGAGATGATGACGAAGGACAACAAATCTTTCCCAAAATGCAAGAAAACAGCACATGGGAATACGAGTCCACGGATCAACAAGAATCAACAGACAACAATAAGAAACAAGCAACAAGAGTCTTTCATTATTCGACCTTCATCATCAACAACCAAAACCAAGAAAACTCATCCACTTTCAAACAACACTCTCCTTCTCAAAACACACCCTTCTCCTCCAGATACAAAAATCCCTCAAAAACAGGTGAATGATGATGTCCAAGAATCCAAAAACATTTCACAGTTATTTAGTTCTTCGAGCCAGAAGTACACTCTCTGCAACCAAACAACCAAGAATGAATCAAAATCTAACGGTTCTATCGCAACCGAAGGCGAAGACCAAGAACCAGAATATCAGTACATCACAACCGTTCTAAACCGTACAGGAATACACAGAGAACCAATAACAAATCTTCAACATTTTCAATGGTTCTCTTCAACACATCCATTAGACCCTTCAATTTTTCACCGTCTTGAACTCTACCCAAACAATAAAGATAACAAATTTACACAGAAAAACGATCTGGGTCCACTCTGTAACCGTAGATTACTATTCGATTTACTAGACGAAGTGTTGTCGGAGATTCTCACCAAACCAAACAGTTACCGTGGGTTGTTGTTAGTAGACACAGTATGGAACAAAGTTCGGAGTTTCCCACGTGCGAAATGCGAGGTTTTAGAAGACATAGACGGGTTAATAGAAATGAAAGACTTGATGGATAAGATGAAGGAAGAAGAAGGTGAAAAACTGGTGGCGGAAATTGAAAGGAAGGTATTAGAAATGTTAGTGAATGAAACAATAACCGTTATGGTGGGTCCTAACCGTTGA 1848 0.3923 MGKDWYWGARKSSKKTTPQTDIPSGCMCALFQTFDFHPFHFSINQPQQHHSPINSISKEPEAPRNSLESQDEQNFKIPKNIITRGGSFNDLSSDVSSPGTKTPTLVARLMGLDLLPDANSPSSSSSSSLSTPSRQSHYHTRPKPDKIKIMKHRHSTDSVIMRSLPETPRLSSEKTSSFVQHRLSLQINKENMIHGEDLDTPPRFSFSKIRKHVKESVGGRKVGKDITNNTIKISNEHEHEQEQEQEKALKPLEESKQGKHSNTSSHSPRLSRFNDNNVNNNHRHSPTLIDQNTHQVLKQSSRPPLVNIEARVSRDSTKTKTQAMSEQKEMMTKDNKSFPKCKKTAHGNTSPRINKNQQTTIRNKQQESFIIRPSSSTTKTKKTHPLSNNTLLLKTHPSPPDTKIPQKQVNDDVQESKNISQLFSSSSQKYTLCNQTTKNESKSNGSIATEGEDQEPEYQYITTVLNRTGIHREPITNLQHFQWFSSTHPLDPSIFHRLELYPNNKDNKFTQKNDLGPLCNRRLLFDLLDEVLSEILTKPNSYRGLLLVDTVWNKVRSFPRAKCEVLEDIDGLIEMKDLMDKMKEEEGEKLVAEIERKVLEMLVNETITVMVGPNR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03004 615 MobiDBLite consensus disorder prediction 327 341 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 116 146 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 253 414 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 342 414 - -
Vifa3g03004 615 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 612 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 85 99 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 261 302 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g03004 615 Pfam Domain of unknown function (DUF4378) 457 605 IPR025486 -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 434 450 - -
Vifa3g03004 615 Pfam DUF761-associated sequence motif 93 120 IPR032795 -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 117 137 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 42 77 - -
Vifa3g03004 615 Coils Coil 575 595 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 434 453 - -
Vifa3g03004 615 MobiDBLite consensus disorder prediction 42 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03004 Vifa-Chr3 854966471 854968523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03004 83 608 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 31.126 2.81e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03004 - - psat:127093666 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03004 3 854966471 854968523 Vifa3g03004 3 854966471 854968523 ECH
Vifa1g04118 1 634666041 634669275 Vifa3g03004 3 854966471 854968523 PCT