Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02997 ATGGCTGTTGCCGAGAGCGGCAGCAGCGCAGGCTCAACTTCATTCAATTGTTACAAAGTAGCAAACTTGACTGAAACCATATTGAATGCAAAGCAAACTTCTAATTTGAAAGACCGTTACATTCTTGGGGAGCAGTTGGGGTGGGGACAATTTGGTGTCATTAGAACATGCTCCGACAAAATGACCGGAGAGGTTTTGGCATGCAAATCAATTGCTAAAGATAGGTTGGTGACTTTGGATGATATGCAAAGTGTTAAACTCGAGATTGAGATCATGGCGAAGTTGTCTGGGCACCCGAATGTTGTAGATCTTAAGGCAGTTTATGAAGAGGAAGATTTCGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGGGAGCTGTTTCACCTGTTAGAGAAGCATGGGAGGTTTTCTGAATCTGAAGGCATGGTTCTCTTTAGACATCTCATGCAAATGGTTTTATACTGTCACGAAAGCGGCGTTGTTCACCGAGATTTGAAGCCCGAAAACATTCTCTTAGCAACTAAATCCTTCTCGTCTCCAATTAAATTGGCCGACTTTGGCCTTGCGACCTACATTAAGCCTGGACAGAGTTTGCATGGTTTAGTTGGGAGTCCATTTTATATAGCTCCAGAGGTATTGGCAGGTGCATATAACCAGGCTGCGGATATTTGGAGTGCTGGGGTTATTCTTTATATTCTGTTGAGTGGGATGCCACCGTTTTGGGGAAAGACTAAGTCGCGAATATTCGAAGCTGTTAAGGCTGCCGATTTGAGGTTCCCGTCTGAACCTTGGAATCGGATCTCGGAATCTGCTAAGGATTTAATAAGGCGGATGCTTTGCGTAGAATCTTCTCAAAGGCTCACCGCCCAAGAGGTTTTGAACCATTGCTGGATGGAAAGCGATCCAACAAATCTGGAACAACTAAGTGAAAATAGAGTTGAAAGTTGCAAAGATTGGCATGTTGGCGGCGGCTCATTCTCTTCATCATTTATGTCAAGAAATAATGACATCAGTTTTGGCGCTAGTTCACCTACGTGCGACGCTCAATCACCTACGTTCACATGCAAATCATCGTTTTCTTCCATTTTCGTGGAACCAGTGACACCGTTTTCTGCTTCTGGCGGGTTTTCATTTCGAAGCTCAGGAGGTCCCATTGGTTTGGAATTTTCTACTCCTGTTTCCTCTATGCCTAGCTTTGCATTTCTCAGCCCTAGTTCTGTTGTCGAGAAAAAGAGTCTTATATTCGAGTTCGAGTCTAACGCGTCAGAAGTAAATGCAATCGCTAAAGATTCTCCTCTCTGCCTTGAAAATTATGTTAAAGAAAAGGATCACAAGCCTGTAGAAACGAAAAGGGCATGTGGAACAAATTGTAACCGGGCGTTGGGATTCCACAGCAAGAGAAACCGGACAATTGGACTTGGCGAGTGTGAGCAACTTGATCTTGTCGTGACCGAATCTGTCATTCGATGGTTATCATGCACACAACTTCCTACATCACCAAATTCATCTCTTGTCTGTTGA 1521 0.4405 MAVAESGSSAGSTSFNCYKVANLTETILNAKQTSNLKDRYILGEQLGWGQFGVIRTCSDKMTGEVLACKSIAKDRLVTLDDMQSVKLEIEIMAKLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFSESEGMVLFRHLMQMVLYCHESGVVHRDLKPENILLATKSFSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADIWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWNRISESAKDLIRRMLCVESSQRLTAQEVLNHCWMESDPTNLEQLSENRVESCKDWHVGGGSFSSSFMSRNNDISFGASSPTCDAQSPTFTCKSSFSSIFVEPVTPFSASGGFSFRSSGGPIGLEFSTPVSSMPSFAFLSPSSVVEKKSLIFEFESNASEVNAIAKDSPLCLENYVKEKDHKPVETKRACGTNCNRALGFHSKRNRTIGLGECEQLDLVVTESVIRWLSCTQLPTSPNSSLVC 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02997 506 CDD STKc_CAMK 39 297 - -
Vifa3g02997 506 Gene3D Phosphorylase Kinase; domain 1 41 126 - -
Vifa3g02997 506 SMART serkin_6 40 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02997 506 Pfam Protein kinase domain 42 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02997 506 SUPERFAMILY Protein kinase-like (PK-like) 37 374 IPR011009 -
Vifa3g02997 506 FunFam Phosphoenolpyruvate carboxylase kinase 127 314 - -
Vifa3g02997 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vifa3g02997 506 Gene3D Transferase(Phosphotransferase) domain 1 127 323 - -
Vifa3g02997 506 ProSiteProfiles Protein kinase domain profile. 40 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g02997 506 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 310 - -
Vifa3g02997 506 ProSitePatterns Protein kinases ATP-binding region signature. 46 73 IPR017441 GO:0005524
Vifa3g02997 506 FunFam Calcium-dependent protein kinase 1 42 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02997 Vifa-Chr3 849061257 849063238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02997 23 303 EF-hand Containing Proteins AT3G57530 48.399 1.70e-95 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g02997 Pkinase 1.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02997 - - psat:127091783 913.294