Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02995 ATGGTTACCGATAATCAAATTTTGGAATATCATGATCCATGTTCATCTTCGGAGAGGTTTCTAAAGCCGAAAAAACCTGCGGGGAGGAAAAAGTTCAGAGAAACGCGCCACCCGATATACCGTGGTGTAAGAAAGAGGGATTCTGGCAAGTGGGTGTGTGAAGTGAGAGAGCCTAACAAGAAAACCAGAATCTGGCTAGGGACATTTCTTACTCCTGAGATGGCGGCGCGTGCGCATGACGTTGCTGCGATTGCGCTTAGAGGAGAGTCTGCTTGTCTTAATTTTGCTGACTCTGCTTGGAGCTTGCCGGTCCCGGCTACGTCGAATGCGAGAGATATCCAAAAGGCGGCGGCAGAGGCAGCGGAGGCTTTCCGGCCGGAGAGTAAGGTTCAGAACAGTGAGGATAGTGAGGAGAGGAAGGAGAATGAGCCGTCGAAGGTGACGGTGGCAGGGGTGGAGACGGTGATGGAGCAACGAGAGGAAGAAGAGGATAGAGTGCCGGAGTATTTGAGAAACATGGTTCTTATGTCACCTGCACGTTACTGGGGGAACCAGTTTTGTTTTGATGACGTGGAATTTGGTGATACTGAAGTTTCATTATGGACTTATTGA 612 0.4967 MVTDNQILEYHDPCSSSERFLKPKKPAGRKKFRETRHPIYRGVRKRDSGKWVCEVREPNKKTRIWLGTFLTPEMAARAHDVAAIALRGESACLNFADSAWSLPVPATSNARDIQKAAAEAAEAFRPESKVQNSEDSEERKENEPSKVTVAGVETVMEQREEEEDRVPEYLRNMVLMSPARYWGNQFCFDDVEFGDTEVSLWTY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02995 203 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vifa3g02995 203 MobiDBLite consensus disorder prediction 122 147 - -
Vifa3g02995 203 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Vifa3g02995 203 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vifa3g02995 203 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Vifa3g02995 203 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vifa3g02995 203 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
Vifa3g02995 203 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Vifa3g02995 203 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Vifa3g02995 203 MobiDBLite consensus disorder prediction 128 146 - -
Vifa3g02995 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 203 IPR045277 GO:0003700
Vifa3g02995 203 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02995 Vifa-Chr3 848894312 848894923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02995 9 203 AP2-EREBP Transcription Factor Family AT4G25470 54.762 4.58e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g02995 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g02995 - K09286 lja:Lj5g3v2028390.1 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04163 1 643095196 643095882 Vifa3g02995 3 848894312 848894923 ECH
Vifa3g02995 3 848894312 848894923 Vifa3g02995 3 848894312 848894923 ECH
Vifa1g04163 1 643095196 643095882 Vifa3g02995 3 848894312 848894923 PCT